BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0002.p (167 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJK0.1 B1DJK0_9BACL Ferritin Dps family protein 293 3e-78 C2U4W8.1 C2U4W8_BACCE Ferritin and Dps-like protein 218 2e-55 C2Y1E3.1 C2Y1E3_BACCE Ferritin and Dps-like protein 217 3e-55 C2V2Q7.1 C2V2Q7_BACCE Ferritin and Dps-like protein 217 3e-55 C3AD06.1 C3AD06_BACMY Ferritin and Dps-like protein 217 4e-55 >B1DJK0.1 B1DJK0_9BACL Ferritin Dps family protein Length = 167 Score = 293 bits (750), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 142/167 (85%), Positives = 151/167 (90%) Query: 1 MKDELVNALNEQMNFEFYSAHVYLAMAAYCSGESLDGFANFFLIQAEEERFHAMKIYKFL 60 M D+L ALNEQMNFEFYSAHVYLAMAAYCSGESLDGFANFF+IQAEEERFH MKIYKFL Sbjct: 1 MNDKLAEALNEQMNFEFYSAHVYLAMAAYCSGESLDGFANFFIIQAEEERFHGMKIYKFL 60 Query: 61 NDRDFRATLAALPEPKNEYSSMLDAFEHAFAHEQQNTTRFYHLADLALDEREHATIYFLK 120 NDR RATL AL EPKNEY SMLDAF+H +AHEQQNT RFY+LADLAL++REHAT+YFLK Sbjct: 61 NDRGRRATLTALGEPKNEYESMLDAFQHGYAHEQQNTKRFYNLADLALNDREHATMYFLK 120 Query: 121 WFIDEQVEEEALFSNIIAKLKRIETDSNAFYMLDAEFAGRTFTAPAE 167 WFIDEQVEEEALF NII KLKRI+ DSNAFYMLDAEFA RTF APAE Sbjct: 121 WFIDEQVEEEALFDNIIQKLKRIDKDSNAFYMLDAEFAQRTFVAPAE 167 >C2U4W8.1 C2U4W8_BACCE Ferritin and Dps-like protein Length = 168 Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/167 (67%), Positives = 132/167 (79%) Query: 1 MKDELVNALNEQMNFEFYSAHVYLAMAAYCSGESLDGFANFFLIQAEEERFHAMKIYKFL 60 + +L NALNEQMNFEFYSAH Y+AMAAYC+ ES DGFANFFL+QAEEERFHAMK+Y ++ Sbjct: 2 LSKKLHNALNEQMNFEFYSAHAYMAMAAYCTAESYDGFANFFLVQAEEERFHAMKLYNYI 61 Query: 61 NDRDFRATLAALPEPKNEYSSMLDAFEHAFAHEQQNTTRFYHLADLALDEREHATIYFLK 120 NDR RA + P NEY S+L+AFE A HE++ T R YHL+D+A DEREHATI FLK Sbjct: 62 NDRGERAIITGFDNPNNEYESVLNAFEVALEHEREVTKRIYHLSDIAWDEREHATITFLK 121 Query: 121 WFIDEQVEEEALFSNIIAKLKRIETDSNAFYMLDAEFAGRTFTAPAE 167 WF+DEQVEEEA F +II KLKRI +DSNA +MLDAE RTFT P E Sbjct: 122 WFVDEQVEEEASFDSIIQKLKRITSDSNALFMLDAELEKRTFTPPTE 168 >C2Y1E3.1 C2Y1E3_BACCE Ferritin and Dps-like protein Length = 168 Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 113/167 (67%), Positives = 133/167 (79%) Query: 1 MKDELVNALNEQMNFEFYSAHVYLAMAAYCSGESLDGFANFFLIQAEEERFHAMKIYKFL 60 + +L +ALNEQMNFEFYSAH Y+AMAAYC+ ES DGFANFFL+QAEEERFHAMK+Y ++ Sbjct: 2 LSKKLHDALNEQMNFEFYSAHAYMAMAAYCTAESYDGFANFFLVQAEEERFHAMKLYNYI 61 Query: 61 NDRDFRATLAALPEPKNEYSSMLDAFEHAFAHEQQNTTRFYHLADLALDEREHATIYFLK 120 NDR RA + P NEY S+L+AFE A HE++ T R YHL+D+A DEREHATI FLK Sbjct: 62 NDRGERAIITGFDNPNNEYESVLNAFEVALEHEREVTKRIYHLSDIAWDEREHATITFLK 121 Query: 121 WFIDEQVEEEALFSNIIAKLKRIETDSNAFYMLDAEFAGRTFTAPAE 167 WF+DEQVEEEA F +II KLKRI +DSNA +MLDAE RTFT PAE Sbjct: 122 WFVDEQVEEEASFDSIIQKLKRITSDSNALFMLDAELEKRTFTPPAE 168 >C2V2Q7.1 C2V2Q7_BACCE Ferritin and Dps-like protein Length = 168 Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 113/167 (67%), Positives = 133/167 (79%) Query: 1 MKDELVNALNEQMNFEFYSAHVYLAMAAYCSGESLDGFANFFLIQAEEERFHAMKIYKFL 60 + +L +ALNEQMNFEFYSAH Y+AMAAYC+ ES DGFANFFL+QAEEERFHAMK+Y ++ Sbjct: 2 LSKKLHDALNEQMNFEFYSAHAYMAMAAYCTAESYDGFANFFLVQAEEERFHAMKLYNYI 61 Query: 61 NDRDFRATLAALPEPKNEYSSMLDAFEHAFAHEQQNTTRFYHLADLALDEREHATIYFLK 120 NDR RA + P NEY S+L+AFE A HE++ T R YHL+D+A DEREHATI FLK Sbjct: 62 NDRGERAIITGFDNPNNEYESVLNAFEVALEHEREVTKRIYHLSDIAWDEREHATITFLK 121 Query: 121 WFIDEQVEEEALFSNIIAKLKRIETDSNAFYMLDAEFAGRTFTAPAE 167 WF+DEQVEEEA F +II KLKRI +DSNA +MLDAE RTFT PAE Sbjct: 122 WFVDEQVEEEASFDSIIQKLKRITSDSNALFMLDAELEKRTFTPPAE 168 >C3AD06.1 C3AD06_BACMY Ferritin and Dps-like protein Length = 168 Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 113/167 (67%), Positives = 133/167 (79%) Query: 1 MKDELVNALNEQMNFEFYSAHVYLAMAAYCSGESLDGFANFFLIQAEEERFHAMKIYKFL 60 + +L +ALNEQMNFEFYSAH Y+AMAAYC+ ES DGFANFFL+QAEEERFHAMK+Y ++ Sbjct: 2 LSKKLHDALNEQMNFEFYSAHAYMAMAAYCTAESYDGFANFFLVQAEEERFHAMKLYNYI 61 Query: 61 NDRDFRATLAALPEPKNEYSSMLDAFEHAFAHEQQNTTRFYHLADLALDEREHATIYFLK 120 NDR RA + P NEY S+L+AFE A HE++ T R YHL+D+A DEREHATI FLK Sbjct: 62 NDRGERAIITGFDHPNNEYDSVLNAFEVALEHEREVTKRIYHLSDIAWDEREHATITFLK 121 Query: 121 WFIDEQVEEEALFSNIIAKLKRIETDSNAFYMLDAEFAGRTFTAPAE 167 WF+DEQVEEEA F +II KLKRI +DSNA +MLDAE RTFT PAE Sbjct: 122 WFVDEQVEEEASFDSIIQKLKRITSDSNALFMLDAELEKRTFTPPAE 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 931,508,313 Number of extensions: 35243799 Number of successful extensions: 79917 Number of sequences better than 1.0e-05: 1201 Number of HSP's gapped: 79580 Number of HSP's successfully gapped: 1201 Length of query: 167 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 42 Effective length of database: 1,883,069,328 Effective search space: 79088911776 Effective search space used: 79088911776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 126 (53.1 bits)