BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0587.0012.p
         (208 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3AKB4.1 C3AKB4_BACMY Putative uncharacterized protein                 68   5e-10
B7ISE2.1 B7ISE2_BACC2 Putative uncharacterized protein                 59   3e-07

>C3AKB4.1 C3AKB4_BACMY Putative uncharacterized protein
          Length = 341

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)

Query: 1   LDQYYIPQSTCYQKMHKEHSVLVYGYDEAASVFYXXXXXXXXNLDNGKFIQTVISYQQLI 60
           +D+++IP    +Q  +  H +L++GYDE   VF            N +F ++ +SYQ   
Sbjct: 107 VDEFFIPNRNAFQNYNYSHDILIFGYDEVKGVFNVLGYDH-----NYEFKKSEVSYQNFK 161

Query: 61  KAWES--DICEHFRRLFRVLNSKQGEYTLSATHLRNQIEGYLSSKPIDQGIYWDQIPVDG 118
            A+ +   I  +  +++    +  G+YT +   + + IE YL S+      Y        
Sbjct: 162 AAFNNIDSITNYCNQIYLYKYNPDGKYTFNFDVVIDLIEDYLYSRNTSSKFYM------- 214

Query: 119 PHAYVQNIQYWIFGHEVYSYIQQLNKQVQEMKGTKSLDIRIPHLLWEHKKCMAERMHYLN 178
               VQ+     +G + Y Y+++    +  + G  S DIR  H L EHK  M +R+ +  
Sbjct: 215 ----VQDTMDRAYGMKSYMYLKKYLADL--LVGKSSYDIRNLHCLLEHKIAMQKRIEFFE 268

Query: 179 L-----GKYDLASEYEKVVKHSLTIRNL 201
                   Y+L+ +Y  + K +L  RN+
Sbjct: 269 SEGYIDTSYNLSKDYIDIQKKALDFRNM 296


>B7ISE2.1 B7ISE2_BACC2 Putative uncharacterized protein
          Length = 330

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 19/204 (9%)

Query: 1   LDQYYIPQSTCYQKMHKEHSVLVYGYDEAASVFYXXXXXXXXNLDNGKFIQTVISYQQLI 60
           +D+YYIP    Y+K H  H +LVYGYD  +  F         N+       +   +++  
Sbjct: 103 VDEYYIPDRRTYKKRHFSHDILVYGYDINSETF--DVLGFNKNVSFKSSKVSFSEFRKSY 160

Query: 61  KAWESDICEHFRRLFRVLNSKQGEYTLSATHLRNQIEGYLSSKPIDQGIYWDQIPVDGPH 120
              E +I     +++    + +GEY  +   +   +E YL S+             +   
Sbjct: 161 LYLE-NIENECNQVYLYKFNPEGEYEFNKKLVIESLEDYLHSR-------------NTSE 206

Query: 121 AYVQNIQYWIFGHEVYSYIQQLNKQVQEMKGTKSLDIRIPHLLWEHKKCMAERMHYL--- 177
            +   ++ W   + + SY Q  N     ++G   +DIR  H+LWEHKK MA R++++   
Sbjct: 207 KFSMLLEPWERFYGMESYKQLYNYFEALIQGEVYIDIRNTHILWEHKKVMASRINFMLEN 266

Query: 178 NLGKYDLASEYEKVVKHSLTIRNL 201
            + +  +  + +K+   +L IRN+
Sbjct: 267 QIIETKIYQDAKKIEDRALIIRNM 290


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,177,482,200
Number of extensions: 44708423
Number of successful extensions: 88982
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 88981
Number of HSP's successfully gapped: 4
Length of query: 208
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 78
Effective length of database: 1,835,964,253
Effective search space: 143205211734
Effective search space used: 143205211734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)