BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0083.p
         (100 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIA0.1 B3KIA0_9BACI Cytoplasmic domain of flagellar protein Fh...   128   2e-28
B1DLV2.1 B1DLV2_9BACL Flagellar protein FhlB-like protein             112   1e-23
C0ZFM5.1 C0ZFM5_BREBN Putative uncharacterized protein                110   5e-23
Q2B7D8.1 Q2B7D8_9BACI Flagellar biosynthesis                           97   4e-19
Q1NIF7.1 Q1NIF7_9DELT Flagellar protein FhlB-like protein              97   6e-19

>B3KIA0.1 B3KIA0_9BACI Cytoplasmic domain of flagellar protein FhlB-like
          protein
          Length = 104

 Score =  128 bits (321), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 75/83 (90%)

Query: 12 LKKAVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSKLDLDQQ 71
          +KKAVALKY+PG+SEAPVVVAKGQG +A+ IL  AK+ GV VQEDAALVE+LSKLDLDQQ
Sbjct: 14 MKKAVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVEILSKLDLDQQ 73

Query: 72 IPPQLYQLVAEILSYVYQSDRSA 94
          IP +LYQLVAE+L+YVY++DR A
Sbjct: 74 IPEELYQLVAEVLTYVYRADRQA 96


>B1DLV2.1 B1DLV2_9BACL Flagellar protein FhlB-like protein
          Length = 101

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 70/84 (83%)

Query: 11 NLKKAVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSKLDLDQ 70
           +KKAVALKY PG  +APVV AKG+G +AD+IL+ A +  V VQ+D++LVEVLSKLD+DQ
Sbjct: 13 TVKKAVALKYEPGAHKAPVVTAKGRGYLADQILEQAAEHHVPVQQDSSLVEVLSKLDVDQ 72

Query: 71 QIPPQLYQLVAEILSYVYQSDRSA 94
           IPP+LY LVAEILS+VY+SD+ A
Sbjct: 73 SIPPELYTLVAEILSFVYRSDQRA 96


>C0ZFM5.1 C0ZFM5_BREBN Putative uncharacterized protein
          Length = 96

 Score =  110 bits (275), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 68/85 (80%)

Query: 13 KKAVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSKLDLDQQI 72
          K+AVALKY  G  EAP VVAKG+G VAD IL+ AK+  + VQED +LVEVL KLDLDQQI
Sbjct: 12 KQAVALKYQAGTMEAPKVVAKGKGYVADNILKTAKEHDIPVQEDPSLVEVLGKLDLDQQI 71

Query: 73 PPQLYQLVAEILSYVYQSDRSAGER 97
          PP+LYQ+VAEIL++VY+ D+  G +
Sbjct: 72 PPELYQVVAEILAFVYRIDKGGGTK 96


>Q2B7D8.1 Q2B7D8_9BACI Flagellar biosynthesis
          Length = 99

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 65/85 (76%), Gaps = 1/85 (1%)

Query: 13 KKAVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSKLDLDQQI 72
          K+AVAL Y  GQ EAP V AKG+G  A+ IL+ AK+  + +QEDA+LVE+L KL++D+ I
Sbjct: 10 KEAVALSYRDGQ-EAPKVKAKGKGLTAENILEKAKEHNIPIQEDASLVELLGKLNIDENI 68

Query: 73 PPQLYQLVAEILSYVYQSDRSAGER 97
          P +LYQ VAEI ++VY++DR AGE 
Sbjct: 69 PEELYQAVAEIFAFVYKADRRAGEH 93


>Q1NIF7.1 Q1NIF7_9DELT Flagellar protein FhlB-like protein
          Length = 96

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 64/80 (80%)

Query: 13 KKAVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSKLDLDQQI 72
          KKAVAL Y   +  AP +VAKG GAVA+K+L++A++ GV + EDA L E+LS+LDL Q+I
Sbjct: 14 KKAVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTEILSRLDLYQEI 73

Query: 73 PPQLYQLVAEILSYVYQSDR 92
          PP+ Y LVAEIL+++Y++++
Sbjct: 74 PPETYLLVAEILAFIYRTNQ 93


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.127    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 528,515,215
Number of extensions: 17228193
Number of successful extensions: 60087
Number of sequences better than 1.0e-05: 1007
Number of HSP's gapped: 59775
Number of HSP's successfully gapped: 1007
Length of query: 100
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 31
Effective length of database: 2,410,646,168
Effective search space: 74730031208
Effective search space used: 74730031208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 125 (52.8 bits)