BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0077.p (379 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIA4.1 B3KIA4_9BACI Mg chelatase, subunit ChlI 431 e-119 B9MM45.1 B9MM45_ANATD Mg chelatase, subunit ChlI 333 2e-89 B0VJF6.1 B0VJF6_9BACT Mg chelatase-related protein EC=6.6.1.1 331 9e-89 B1DLV4.1 B1DLV4_9BACL Magnesium chelatase ChlI subunit 328 4e-88 B7DDD9.1 B7DDD9_DESSA Mg chelatase, subunit ChlI 328 4e-88 >B3KIA4.1 B3KIA4_9BACI Mg chelatase, subunit ChlI Length = 536 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 212/323 (65%), Positives = 245/323 (75%), Gaps = 1/323 (0%) Query: 57 VEDYSDVLGQNHVKRALMIAAAGMHNIVLIGPPGTGKTMLIKRLPGILPELGDRESLEVT 116 +EDY DV+GQ H+KRAL IAAAGMHNI+LIGPPGTGKTML+KRLP ILP L D+E+L T Sbjct: 211 LEDYRDVIGQQHIKRALTIAAAGMHNILLIGPPGTGKTMLMKRLPTILPPLADQEALTTT 270 Query: 117 KIFSAAGKLKDARSGLMRCRPFRSPHHTXXXXXXXXXXXXXXXXXXXLAHRGVLFLDELP 176 KIFSAAGKLK + GLM+ RPFRSPHHT LAH+G+LFLDELP Sbjct: 271 KIFSAAGKLKPS-DGLMKRRPFRSPHHTISAGGLIGGGTIPKPGEVSLAHKGILFLDELP 329 Query: 177 EFSRNVLEVLRQPLEDGVVTISRARASFTFPAQFLLACSMNPCSCGYLGSGGTQLRCTCS 236 EFSR+VLEVLRQPLED VTISRARA FTFPA F+LACSMNPC CGY GS RCTCS Sbjct: 330 EFSRHVLEVLRQPLEDREVTISRARAVFTFPAHFMLACSMNPCPCGYYGSDHPHQRCTCS 389 Query: 237 PAKIAQYRSKISGPLLDRIDMQVDVPRPTDWEGQGPSLSSAEMRAEVLKVQAIQAERYKS 296 ++IAQYR+KISGPL+DRID+QVDVPRP +W G P LSS MR +V QAIQ +RY Sbjct: 390 VSRIAQYRAKISGPLMDRIDLQVDVPRPKEWPGSTPPLSSEHMRDQVYAAQAIQLKRYDG 449 Query: 297 LPIAWNSELSGAALRHYARLHKDGRELLNDILENLGLSMRAHDRIIKLARTIADLEGAVD 356 LP WNSEL G+ LR +ARL K+ +LL ++ LGLSMRA+DRI+KLARTIADLE + Sbjct: 450 LPFGWNSELFGSFLRKHARLDKESADLLQATIDTLGLSMRAYDRILKLARTIADLEASDG 509 Query: 357 ISSAHLAEAVQYRNLDRQVVMEE 379 I S H+AEA+QYR LDRQ + E Sbjct: 510 IQSRHVAEAIQYRQLDRQYIATE 532 >B9MM45.1 B9MM45_ANATD Mg chelatase, subunit ChlI Length = 510 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 165/320 (51%), Positives = 219/320 (68%), Gaps = 6/320 (1%) Query: 59 DYSDVLGQNHVKRALMIAAAGMHNIVLIGPPGTGKTMLIKRLPGILPELGDRESLEVTKI 118 D+S+V GQ +VKRA+ +A AGMHN++LIGPPG GKTM+ +R+P ILP + ESLEVTKI Sbjct: 195 DFSEVKGQEYVKRAVEVAVAGMHNLLLIGPPGNGKTMIAQRIPTILPPMTFEESLEVTKI 254 Query: 119 FSAAGKLKDARSGLMRCRPFRSPHHTXXXXXXXXXXXXXXXXXXXLAHRGVLFLDELPEF 178 +S AG LKD ++ L+ RPFRSPHHT LAH GVLFLDE PEF Sbjct: 255 YSCAGLLKDGQA-LITARPFRSPHHTSSSIAIIGGGRVPKPGEVSLAHNGVLFLDEFPEF 313 Query: 179 SRNVLEVLRQPLEDGVVTISRARASFTFPAQFLLACSMNPCSCGYLGSGGTQLRCTCSPA 238 + +EVLRQPLEDG VTISR AS +PA+F+L CSMNPC CGY S + CTC+PA Sbjct: 314 DKKTIEVLRQPLEDGYVTISRVNASIEYPARFMLVCSMNPCKCGYFLSD--ERECTCTPA 371 Query: 239 KIAQYRSKISGPLLDRIDMQVDVPRPTDWEGQGPSL--SSAEMRAEVLKVQAIQAERYKS 296 +I QY +ISGP+LDRID+QV+V + E S+ SA MR EV + + IQ ER+K Sbjct: 372 QIKQYLGRISGPILDRIDVQVEV-KLVKLENFNSSICKDSAAMRKEVERARQIQLERFKG 430 Query: 297 LPIAWNSELSGAALRHYARLHKDGRELLNDILENLGLSMRAHDRIIKLARTIADLEGAVD 356 L I +NS++ G+ + + +L K ++LL LGLS+R + +I+K+ARTIADLEG+ + Sbjct: 431 LGIFYNSQMKGSLVNKFCKLSKKEKQLLERAFTTLGLSLRGYTKILKVARTIADLEGSEE 490 Query: 357 ISSAHLAEAVQYRNLDRQVV 376 I + HL EA+ YR L+R+++ Sbjct: 491 IKAEHLQEAISYRLLERRLI 510 >B0VJF6.1 B0VJF6_9BACT Mg chelatase-related protein EC=6.6.1.1 Length = 513 Score = 331 bits (848), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 170/318 (53%), Positives = 212/318 (66%), Gaps = 2/318 (0%) Query: 59 DYSDVLGQNHVKRALMIAAAGMHNIVLIGPPGTGKTMLIKRLPGILPELGDRESLEVTKI 118 D SDV GQ VKRAL +AAAG HN+++IGPPG+GKTML +R+P ILPEL E+LE TKI Sbjct: 193 DMSDVKGQFQVKRALEVAAAGGHNVLMIGPPGSGKTMLARRVPTILPELNLEEALEATKI 252 Query: 119 FSAAGKLKDARSGLMRCRPFRSPHHTXXXXXXXXXXXXXXXXXXXLAHRGVLFLDELPEF 178 S AG K+ R+G++ RPFRSPHHT L+HRGVLFLDELPEF Sbjct: 253 HSVAGYSKNFRNGILTTRPFRSPHHTISDVALIGGGAFPKPGEVSLSHRGVLFLDELPEF 312 Query: 179 SRNVLEVLRQPLEDGVVTISRARASFTFPAQFLLACSMNPCSCGYLGSGGTQLRCTCSPA 238 R VLEVLRQPLEDGVVTISRA +S TFPA+F+L SMNPC CGY GS +C C Sbjct: 313 KRVVLEVLRQPLEDGVVTISRAASSLTFPAEFMLIASMNPCPCGYFGSNIPNHQCNCEWG 372 Query: 239 KIAQYRSKISGPLLDRIDMQVDVPRPT--DWEGQGPSLSSAEMRAEVLKVQAIQAERYKS 296 I +YRS+ISGPLLDRID+ V+VP + D S ++RA V K +AIQ +R+K Sbjct: 373 SILRYRSRISGPLLDRIDIHVEVPSVSYADLASLPTGDKSVDIRARVNKARAIQHDRFKG 432 Query: 297 LPIAWNSELSGAALRHYARLHKDGRELLNDILENLGLSMRAHDRIIKLARTIADLEGAVD 356 I NS+++ LR + L LL + ++ +G S R DRI+K++RTIADLEG D Sbjct: 433 TGIFNNSQMNSKQLRKFCILDDASNALLQNAIDKMGYSARVFDRILKVSRTIADLEGRKD 492 Query: 357 ISSAHLAEAVQYRNLDRQ 374 I S ++EA+QYR LDR+ Sbjct: 493 IISDDISEAIQYRTLDRK 510 >B1DLV4.1 B1DLV4_9BACL Magnesium chelatase ChlI subunit Length = 305 Score = 328 bits (842), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 166/304 (54%), Positives = 214/304 (70%), Gaps = 4/304 (1%) Query: 73 LMIAAAGMHNIVLIGPPGTGKTMLIKRLPGILPELGDRESLEVTKIFSAAGKLKDARSGL 132 ++IAAAG HN++ GPPGTGKTM+I+RLPGILP L + E+LEVTKI+SAAGKL GL Sbjct: 1 MLIAAAGKHNLLFAGPPGTGKTMMIRRLPGILPTLTEEEALEVTKIYSAAGKLSTDAKGL 60 Query: 133 MRCRPFRSPHHTXXXXXXXXXXXXXXXXXXXLAHRGVLFLDELPEFSRNVLEVLRQPLED 192 +R PFRSPHHT LAH GVL+LDELPEFSR VLEVLRQPLED Sbjct: 61 IRIAPFRSPHHTISAGGLIGGGSVPKPGEVTLAHHGVLYLDELPEFSRTVLEVLRQPLED 120 Query: 193 GVVTISRARASFTFPAQFLLACSMNPCSCGYLGSGGTQLRCTCSPAKIAQYRSKISGPLL 252 G+VTI+R+RA F FPA+ +LA S NPC CGY G + RCTCS + IA+Y+SK+SGPLL Sbjct: 121 GIVTIARSRAVFHFPARLMLAVSFNPCPCGYAGHETAEKRCTCSDSAIAKYKSKMSGPLL 180 Query: 253 DRIDMQVDVPRPTDWEGQGPS---LSSAEMRAEVLKVQAIQAERYKSLPIA-WNSELSGA 308 DRID+Q++VPRP + EG S +S+A M+ VL+ +A + +R + L + + LSG Sbjct: 181 DRIDIQLEVPRPIELEGDAASPVEMSTARMKQFVLEARARKEQRDEELGLKRYAGRLSGT 240 Query: 309 ALRHYARLHKDGRELLNDILENLGLSMRAHDRIIKLARTIADLEGAVDISSAHLAEAVQY 368 +LR + K+ LL+ L L +SMRA+DRI++LARTIAD+EG+ + H+AEA+QY Sbjct: 241 SLRRSILMKKEAFVLLDHALTVLNISMRAYDRILRLARTIADVEGSEYVEDVHVAEAIQY 300 Query: 369 RNLD 372 R LD Sbjct: 301 RRLD 304 >B7DDD9.1 B7DDD9_DESSA Mg chelatase, subunit ChlI Length = 508 Score = 328 bits (842), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 177/370 (47%), Positives = 237/370 (64%), Gaps = 12/370 (3%) Query: 14 PVTVSSGPIVQEQALVKVLTLEHL-KYTAEYKQADPVSTGVNLMVE-------DYSDVLG 65 P V+ +V+ ++ V TL L + +P + +L+ D+S+V G Sbjct: 141 PENVNEAAVVEGLSVYGVPTLSQLVNFLIGEDHLEPATVDTDLLWSGRQSFGMDFSEVKG 200 Query: 66 QNHVKRALMIAAAGMHNIVLIGPPGTGKTMLIKRLPGILPELGDRESLEVTKIFSAAGKL 125 Q H KRA+ I AAG HN++ IGPPG+GKTML +R+P +LP L E+LEVTKI+S +G+L Sbjct: 201 QEHAKRAIEIGAAGNHNLLFIGPPGSGKTMLARRIPTVLPPLVFEEALEVTKIYSVSGQL 260 Query: 126 KDARSGLMRCRPFRSPHHTXXXXXXXXXXXXXXXXXXXLAHRGVLFLDELPEFSRNVLEV 185 + +S LM RPFR+PHHT LAHRGVLFLDELPEF +NVLEV Sbjct: 261 ERDKS-LMVTRPFRAPHHTISDAGLIGGGAYPKPGEVSLAHRGVLFLDELPEFKKNVLEV 319 Query: 186 LRQPLEDGVVTISRARASFTFPAQFLLACSMNPCSCGYLGSGGTQLRCTCSPAKIAQYRS 245 LRQPLE G VTISRA S ++PA F+L +MNPC CGY + CTCS +A+YRS Sbjct: 320 LRQPLEGGEVTISRAAMSLSYPADFMLVAAMNPCPCGYFTD--ERHACTCSAQAVARYRS 377 Query: 246 KISGPLLDRIDMQVDVPRPTDWEGQGPS-LSSAEMRAEVLKVQAIQAERYKSLPIAWNSE 304 K+SGPLLDRID+Q++VP + + S L SA MRA + +V+ IQA+RYK + I NSE Sbjct: 378 KLSGPLLDRIDLQIEVPAVEYKDLRDSSGLDSASMRANIERVREIQADRYKDMNILTNSE 437 Query: 305 LSGAALRHYARLHKDGRELLNDILENLGLSMRAHDRIIKLARTIADLEGAVDISSAHLAE 364 LSG++L + +L + L + +LGLS RA+ RI++++RTIADL GA I HLAE Sbjct: 438 LSGSSLEKFCKLSEAEHSFLEQAVRSLGLSARAYTRILRISRTIADLAGADMIQVQHLAE 497 Query: 365 AVQYRNLDRQ 374 A+ YR++DRQ Sbjct: 498 AINYRSMDRQ 507 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,090,365,731 Number of extensions: 81029338 Number of successful extensions: 393801 Number of sequences better than 1.0e-05: 1172 Number of HSP's gapped: 389814 Number of HSP's successfully gapped: 1172 Length of query: 379 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 242 Effective length of database: 1,770,017,148 Effective search space: 428344149816 Effective search space used: 428344149816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)