BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0076.p
         (75 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2PKT3.1 C2PKT3_BACCE Organic hydroperoxide resistance protein         79   2e-13
C3B8H9.1 C3B8H9_BACMY Organic hydroperoxide resistance protein         79   2e-13
C3BQK1.1 C3BQK1_9BACI Organic hydroperoxide resistance protein         79   2e-13
C3AR73.1 C3AR73_BACMY Organic hydroperoxide resistance protein         79   2e-13
Q81LC3.1 Q81LC3_BACAN Organic hydroperoxide resistance protein         78   2e-13

>C2PKT3.1 C2PKT3_BACCE Organic hydroperoxide resistance protein
          Length = 138

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 48/74 (64%)

Query: 1   MVARMGKVKIEGSEVTATVSFGKVEDGGFGIAXXXXXXXXXXXXETAARLVEAAHGACPY 60
           +V R  +VK+E +EVTA VS GK  DGGFG++            + A  LVEAAHG CPY
Sbjct: 64  LVIRTKRVKVESTEVTAHVSIGKDTDGGFGLSAVLDVHVAGVSHDEAQELVEAAHGVCPY 123

Query: 61  SRATRGNIVVELNV 74
           S+ATRGNI V LNV
Sbjct: 124 SKATRGNIEVVLNV 137


>C3B8H9.1 C3B8H9_BACMY Organic hydroperoxide resistance protein
          Length = 138

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 48/75 (64%)

Query: 1   MVARMGKVKIEGSEVTATVSFGKVEDGGFGIAXXXXXXXXXXXXETAARLVEAAHGACPY 60
           +V R  +VK+E +EVTA +S GK  DGGFG++              A  LVEAAHG CPY
Sbjct: 64  LVIRTKRVKVESTEVTAHISIGKDTDGGFGLSAVLDVRVAGVSHAEARELVEAAHGVCPY 123

Query: 61  SRATRGNIVVELNVL 75
           S+ATRGNI V LNVL
Sbjct: 124 SKATRGNIEVTLNVL 138


>C3BQK1.1 C3BQK1_9BACI Organic hydroperoxide resistance protein
          Length = 138

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 48/75 (64%)

Query: 1   MVARMGKVKIEGSEVTATVSFGKVEDGGFGIAXXXXXXXXXXXXETAARLVEAAHGACPY 60
           +V R  +VK+E +EVTA +S GK  DGGFG++              A  LVEAAHG CPY
Sbjct: 64  LVIRTKRVKVESTEVTAHISIGKDTDGGFGLSAVLDVRVAGVSHAEARELVEAAHGVCPY 123

Query: 61  SRATRGNIVVELNVL 75
           S+ATRGNI V LNVL
Sbjct: 124 SKATRGNIEVTLNVL 138


>C3AR73.1 C3AR73_BACMY Organic hydroperoxide resistance protein
          Length = 138

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 48/75 (64%)

Query: 1   MVARMGKVKIEGSEVTATVSFGKVEDGGFGIAXXXXXXXXXXXXETAARLVEAAHGACPY 60
           +V R  +VK+E +EVTA +S GK  DGGFG++              A  LVEAAHG CPY
Sbjct: 64  LVIRTKRVKVESTEVTAHISIGKDTDGGFGLSAVLDVRVAGVSHAEARELVEAAHGVCPY 123

Query: 61  SRATRGNIVVELNVL 75
           S+ATRGNI V LNVL
Sbjct: 124 SKATRGNIEVTLNVL 138


>Q81LC3.1 Q81LC3_BACAN Organic hydroperoxide resistance protein
          Length = 138

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 47/74 (63%)

Query: 1   MVARMGKVKIEGSEVTATVSFGKVEDGGFGIAXXXXXXXXXXXXETAARLVEAAHGACPY 60
           +V R  +VK+E +EVTA VS GK  DGGFG++              A  LVEAAHG CPY
Sbjct: 64  LVIRTKRVKVESTEVTAHVSIGKDTDGGFGLSAVLDVHVAGVSHSEAQELVEAAHGVCPY 123

Query: 61  SRATRGNIVVELNV 74
           S+ATRGNI V LNV
Sbjct: 124 SKATRGNIEVTLNV 137


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 292,520,296
Number of extensions: 5922816
Number of successful extensions: 10498
Number of sequences better than 1.0e-05: 218
Number of HSP's gapped: 10511
Number of HSP's successfully gapped: 218
Length of query: 75
Length of database: 3,060,696,203
Length adjustment: 46
Effective length of query: 29
Effective length of database: 2,627,329,513
Effective search space: 76192555877
Effective search space used: 76192555877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)