BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0074.p (154 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCZ0.1 B1DCZ0_9BACL Transcriptional regulator, MarR family 162 1e-38 B7WS75.1 B7WS75_COMTE Transcriptional regulator, MarR family 161 2e-38 C2V165.1 C2V165_BACCE Transcriptional regulator, MarR 159 5e-38 C3H6V5.1 C3H6V5_BACTU Transcriptional regulator, MarR 157 4e-37 C2UJM5.1 C2UJM5_BACCE Transcriptional regulator, MarR 157 4e-37 >B1DCZ0.1 B1DCZ0_9BACL Transcriptional regulator, MarR family Length = 146 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/144 (53%), Positives = 108/144 (75%), Gaps = 1/144 (0%) Query: 7 TPELL-LENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKELGEA 65 T ELL LENQLCF Y+CSRE TKLY+P L ++GLTY+QY+ ML LWE++ +VKELG Sbjct: 3 TNELLKLENQLCFAFYSCSREITKLYRPLLAELGLTYTQYITMLALWEQDNVSVKELGVK 62 Query: 66 LFLDSGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAEGTM 125 L LDSGTLTPLLK+L++ GL+ R R DER +++ LTEQG+ALK +A+C+P ++ EGT Sbjct: 63 LLLDSGTLTPLLKKLESMGLLTRARDKSDERHLIVRLTEQGQALKDKASCVPLRLFEGTA 122 Query: 126 LSADEFVGLLGQFKDLLARVHEAN 149 + +E L Q + L++++++A Sbjct: 123 VEPEEIFALRSQVQTLMSKMNDAT 146 >B7WS75.1 B7WS75_COMTE Transcriptional regulator, MarR family Length = 157 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/143 (56%), Positives = 103/143 (72%) Query: 10 LLLENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKELGEALFLD 69 L L+NQ+CF +Y+ S TKLY+P LD IGLTY QYLVMLVLWE +Q TV ELGE L+LD Sbjct: 15 LRLDNQVCFALYSASLAMTKLYKPLLDAIGLTYPQYLVMLVLWEGDQLTVSELGERLYLD 74 Query: 70 SGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAEGTMLSAD 129 SGTLTPLLKRL++AGL+ R+R QDER+V I+LT+ GRAL++EA IP + + T + Sbjct: 75 SGTLTPLLKRLESAGLLARQRDAQDERRVRIALTDTGRALRAEAEKIPACVLQSTQCTLP 134 Query: 130 EFVGLLGQFKDLLARVHEANAHT 152 E L GQ L AR+ +H+ Sbjct: 135 ELQALTGQLGTLRARLAPRRSHS 157 >C2V165.1 C2V165_BACCE Transcriptional regulator, MarR Length = 150 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 76/140 (54%), Positives = 102/140 (72%) Query: 10 LLLENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKELGEALFLD 69 L L+NQLCF+IYACSRE T+ Y+P+LD+IG+TY QY+ +LVLWE++ TVKE+GE LFLD Sbjct: 6 LHLDNQLCFSIYACSREVTRFYRPYLDEIGITYPQYITLLVLWEQDGLTVKEIGERLFLD 65 Query: 70 SGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAEGTMLSAD 129 SGTLTP+LKR+++ L+ R RS +DERKV I LTEQG+ LK +A +P MA ++ Sbjct: 66 SGTLTPMLKRMESLNLVKRVRSKEDERKVCIELTEQGKDLKEKACSLPKTMATNLGITEQ 125 Query: 130 EFVGLLGQFKDLLARVHEAN 149 E+ LL Q L+ + N Sbjct: 126 EYRSLLIQLNKLIETMKTIN 145 >C3H6V5.1 C3H6V5_BACTU Transcriptional regulator, MarR Length = 150 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 104/144 (72%) Query: 6 TTPELLLENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKELGEA 65 T L L+NQLCF+IYACSRE T+ Y+P+L+++G+TY QY+ +LVLWE++ TVKE+GE Sbjct: 2 TENSLHLDNQLCFSIYACSREVTRFYRPYLEEMGITYPQYITLLVLWEQDGLTVKEIGER 61 Query: 66 LFLDSGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAEGTM 125 LFLDSGTLTP+LKR+++ L+ R RS +DERKV I LTEQG+ LK +A +P MA Sbjct: 62 LFLDSGTLTPMLKRMESLKLVKRVRSKEDERKVCIELTEQGKDLKEKACSLPTTMATNLG 121 Query: 126 LSADEFVGLLGQFKDLLARVHEAN 149 ++ E++ LL Q L+ + N Sbjct: 122 ITEQEYLSLLIQLNKLIDTMKTIN 145 >C2UJM5.1 C2UJM5_BACCE Transcriptional regulator, MarR Length = 150 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 103/144 (71%) Query: 6 TTPELLLENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKELGEA 65 T L L+NQLCF+IYACSRE T+ Y+P+L+++G+TY QY+ +LVLWE++ TVKE+GE Sbjct: 2 TEDSLHLDNQLCFSIYACSREVTRFYRPYLEEMGITYPQYITLLVLWEQDGLTVKEIGER 61 Query: 66 LFLDSGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAEGTM 125 LFLDSGTLTP+LKR+++ L+ R RS +DERKV I LTEQG+ LK +A +P MA Sbjct: 62 LFLDSGTLTPMLKRMESLKLVKRVRSKEDERKVCIELTEQGKDLKEKACSLPTTMATNLG 121 Query: 126 LSADEFVGLLGQFKDLLARVHEAN 149 ++ E+ LL Q L+ + N Sbjct: 122 ITEQEYRSLLIQLNKLIDTIKTIN 145 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 821,830,451 Number of extensions: 28234814 Number of successful extensions: 81686 Number of sequences better than 1.0e-05: 1011 Number of HSP's gapped: 82136 Number of HSP's successfully gapped: 1011 Length of query: 154 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 38 Effective length of database: 1,967,858,463 Effective search space: 74778621594 Effective search space used: 74778621594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)