BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0073.p (387 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIB1.1 B3KIB1_9BACI Succinyl-CoA synthetase, beta subunit EC=6... 598 e-169 B1DLV6.1 B1DLV6_9BACL Succinyl-CoA synthetase, beta subunit EC=6... 584 e-165 C5D8V2.1 C5D8V2_9BACI Succinyl-CoA synthetase, beta subunit EC=6... 560 e-158 B7GGD2.1 B7GGD2_ANOFW Succinyl-CoA synthetase, beta subunit 556 e-156 C1P6R4.1 C1P6R4_BACCO Succinyl-CoA synthetase, beta subunit EC=6... 555 e-156 >B3KIB1.1 B3KIB1_9BACI Succinyl-CoA synthetase, beta subunit EC=6.2.1.5 Length = 386 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 304/387 (78%), Positives = 326/387 (84%), Gaps = 2/387 (0%) Query: 1 MNIHEYQGKEVLKKYGVAVPNGKXXXXXXXXXXXXXSLGTPVVVVKAQIHXXXXXXXXXX 60 MNIHEYQGK+VLK+YGVAVPNGK SLG+PV VVKAQIH Sbjct: 1 MNIHEYQGKQVLKQYGVAVPNGKVAFTVEEAVEAAQSLGSPVTVVKAQIHAGGRGKAGGV 60 Query: 61 XXXXSSEEVRAYAEEILGKTLITHQTGPEGKVVKRLLIEEGCQIVKEYYIGLVVDRGSGR 120 + +EVRAYAEEILGK L+THQTGPEGK VKRLLIEEGC I KEYYIG+VVDR +GR Sbjct: 61 KVAKNLDEVRAYAEEILGKVLVTHQTGPEGKEVKRLLIEEGCDIRKEYYIGVVVDRATGR 120 Query: 121 VVMMASEEGGTEIEEVAATHPEKIFKEIIDPAVGLQTFQARKLAYSIAIPTELVNKAVKF 180 VVMMASEEGGTEIEEVAA PEKIFKE++DPA+GLQTFQARKLAYSI IP ELV KAV+F Sbjct: 121 VVMMASEEGGTEIEEVAAATPEKIFKEVVDPAIGLQTFQARKLAYSINIPNELVGKAVQF 180 Query: 181 MQALYLAFVDKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALFRHKDIXXXXXXXXXXV 240 M ALY AFV+KDCSIAEINPLVVTGDGNVMALDAKLNFDSNALFRHKDI Sbjct: 181 MLALYKAFVEKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALFRHKDILELRDLDEEDE 240 Query: 241 KEIEASKFDLSYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATTEKVTE 300 KEIEASK+DLSYIALDGNIGCMVNGAGLAMATMDIIKYYGG+PANFLDVGGGATTEKVTE Sbjct: 241 KEIEASKYDLSYIALDGNIGCMVNGAGLAMATMDIIKYYGGDPANFLDVGGGATTEKVTE 300 Query: 301 AFKIILSDDKVNGIFVNIFGGIMRCDVIASGVVEAARQLGLTKPLVVRLEGTNVALGKEI 360 AFKIILSD +V GIFVNIFGGIMRCDVIA+GVVEAA+QLGLT+PLVVRLEGTNV LGK+I Sbjct: 301 AFKIILSDPQVKGIFVNIFGGIMRCDVIATGVVEAAKQLGLTRPLVVRLEGTNVDLGKQI 360 Query: 361 LAGSGLNIVAAXXXXMADGARKIVALV 387 LA SGLNIV A MADGA+KIV+LV Sbjct: 361 LAESGLNIVPA--DSMADGAQKIVSLV 385 >B1DLV6.1 B1DLV6_9BACL Succinyl-CoA synthetase, beta subunit EC=6.2.1.5 Length = 386 Score = 584 bits (1505), Expect = e-165, Method: Compositional matrix adjust. Identities = 296/387 (76%), Positives = 320/387 (82%), Gaps = 2/387 (0%) Query: 1 MNIHEYQGKEVLKKYGVAVPNGKXXXXXXXXXXXXXSLGTPVVVVKAQIHXXXXXXXXXX 60 MNIHEYQGKEVLK+YGVAVP GK SLGTPVVVVKAQIH Sbjct: 1 MNIHEYQGKEVLKQYGVAVPEGKVAFSVDEAVEAAQSLGTPVVVVKAQIHAGGRGKAGGV 60 Query: 61 XXXXSSEEVRAYAEEILGKTLITHQTGPEGKVVKRLLIEEGCQIVKEYYIGLVVDRGSGR 120 + +EVRAYA EILGK L+THQTGPEGK VKRLLIE+GC I KEYY+G+V+DRG+GR Sbjct: 61 KVAKNIDEVRAYASEILGKVLVTHQTGPEGKEVKRLLIEQGCDIKKEYYVGVVIDRGTGR 120 Query: 121 VVMMASEEGGTEIEEVAATHPEKIFKEIIDPAVGLQTFQARKLAYSIAIPTELVNKAVKF 180 V MMASEEGGTEIEEVAA PEKI KE+IDPA+GLQ FQARKLAY+I IP+ELVNKAVKF Sbjct: 121 VTMMASEEGGTEIEEVAAHSPEKIIKEVIDPAIGLQVFQARKLAYAINIPSELVNKAVKF 180 Query: 181 MQALYLAFVDKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALFRHKDIXXXXXXXXXXV 240 M ALY AFVDKDCSIAEINPLVVTGDGNVMALDAKLNFDSNAL+RHKDI Sbjct: 181 MIALYTAFVDKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALYRHKDIVALRDLEEEDA 240 Query: 241 KEIEASKFDLSYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATTEKVTE 300 KEIEASK+DLSYIAL+GNIGCMVNGAGLAMATMDIIKYYGG+PANFLDVGGGAT EKVTE Sbjct: 241 KEIEASKYDLSYIALEGNIGCMVNGAGLAMATMDIIKYYGGDPANFLDVGGGATKEKVTE 300 Query: 301 AFKIILSDDKVNGIFVNIFGGIMRCDVIASGVVEAARQLGLTKPLVVRLEGTNVALGKEI 360 AFKIILSD+ V GIFVNIFGGIMRCDVIA GV+ AAR+LGL +PLVVRLEGTNV LGK++ Sbjct: 301 AFKIILSDENVKGIFVNIFGGIMRCDVIADGVIAAARELGLDRPLVVRLEGTNVELGKKM 360 Query: 361 LAGSGLNIVAAXXXXMADGARKIVALV 387 L SGLNIVAA MADGA+KIV LV Sbjct: 361 LNESGLNIVAA--DSMADGAQKIVNLV 385 >C5D8V2.1 C5D8V2_9BACI Succinyl-CoA synthetase, beta subunit EC=6.2.1.5 Length = 386 Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust. Identities = 284/387 (73%), Positives = 308/387 (79%), Gaps = 2/387 (0%) Query: 1 MNIHEYQGKEVLKKYGVAVPNGKXXXXXXXXXXXXXSLGTPVVVVKAQIHXXXXXXXXXX 60 MNIHEYQ KE+L+ YGV+VPNG+ LG+PV VVKAQIH Sbjct: 1 MNIHEYQAKEILRNYGVSVPNGRVAFTVEEAVEAAKELGSPVCVVKAQIHAGGRGKAGGV 60 Query: 61 XXXXSSEEVRAYAEEILGKTLITHQTGPEGKVVKRLLIEEGCQIVKEYYIGLVVDRGSGR 120 S +EVR YA E+LGK L+THQTGPEGK VKRLLIEEGC I KEYYIGLVVDR + R Sbjct: 61 KVAKSLDEVRTYASELLGKVLVTHQTGPEGKEVKRLLIEEGCDIKKEYYIGLVVDRATSR 120 Query: 121 VVMMASEEGGTEIEEVAATHPEKIFKEIIDPAVGLQTFQARKLAYSIAIPTELVNKAVKF 180 VV+M SEEGGTEIEEVAA PEKIFKE IDPAVGLQ FQAR+LA++I IP ELVN+AVKF Sbjct: 121 VVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGLQAFQARRLAFNINIPKELVNQAVKF 180 Query: 181 MQALYLAFVDKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALFRHKDIXXXXXXXXXXV 240 M LY FVDKDCSIAEINPLVVTGDG VMALDAKLNFDSNAL+RHKDI Sbjct: 181 MMGLYQVFVDKDCSIAEINPLVVTGDGKVMALDAKLNFDSNALYRHKDILEYRDLDEEDP 240 Query: 241 KEIEASKFDLSYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATTEKVTE 300 KE+EASK+DL+YIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGAT EKVTE Sbjct: 241 KEVEASKYDLNYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATAEKVTE 300 Query: 301 AFKIILSDDKVNGIFVNIFGGIMRCDVIASGVVEAARQLGLTKPLVVRLEGTNVALGKEI 360 AFKIILSD V GIFVNIFGGIM+CDVIASG+VEA +Q+GL PLVVRLEGTNV LGK+I Sbjct: 301 AFKIILSDPNVKGIFVNIFGGIMKCDVIASGIVEATKQVGLNLPLVVRLEGTNVELGKKI 360 Query: 361 LAGSGLNIVAAXXXXMADGARKIVALV 387 L SGLNI AA MADGA+KIV LV Sbjct: 361 LQESGLNITAA--DSMADGAQKIVELV 385 >B7GGD2.1 B7GGD2_ANOFW Succinyl-CoA synthetase, beta subunit Length = 401 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 281/387 (72%), Positives = 310/387 (80%), Gaps = 2/387 (0%) Query: 1 MNIHEYQGKEVLKKYGVAVPNGKXXXXXXXXXXXXXSLGTPVVVVKAQIHXXXXXXXXXX 60 MNIHEYQGKE+L+ YGV+VPNG+ LG+ V VVKAQIH Sbjct: 16 MNIHEYQGKEILRSYGVSVPNGRVAFTVEEAVEAAKELGSSVCVVKAQIHAGGRGKAGGV 75 Query: 61 XXXXSSEEVRAYAEEILGKTLITHQTGPEGKVVKRLLIEEGCQIVKEYYIGLVVDRGSGR 120 S +EVR YA E+LGK L+THQTGPEGK VKRLLIEEGC I KEYYIGLVVDR + R Sbjct: 76 KVAKSLDEVRTYASELLGKVLVTHQTGPEGKEVKRLLIEEGCDIKKEYYIGLVVDRATSR 135 Query: 121 VVMMASEEGGTEIEEVAATHPEKIFKEIIDPAVGLQTFQARKLAYSIAIPTELVNKAVKF 180 VV+M SEEGGTEIEEVAA PEKIFKE IDPAVGLQ FQAR++A++I IP ELVN+AVKF Sbjct: 136 VVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGLQAFQARRMAFNINIPKELVNQAVKF 195 Query: 181 MQALYLAFVDKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALFRHKDIXXXXXXXXXXV 240 M LY FV+KDCSIAEINPLVVTGDG VMALDAKLNFDSNAL+RHKDI Sbjct: 196 MLGLYQVFVEKDCSIAEINPLVVTGDGKVMALDAKLNFDSNALYRHKDILEYRDLDEEDP 255 Query: 241 KEIEASKFDLSYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATTEKVTE 300 KE+EASK+DL+YI+LDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATTEKVTE Sbjct: 256 KEVEASKYDLNYISLDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATTEKVTE 315 Query: 301 AFKIILSDDKVNGIFVNIFGGIMRCDVIASGVVEAARQLGLTKPLVVRLEGTNVALGKEI 360 AFKIILSD V GIFVNIFGGIM+CDVIA+G+VEA +Q+GL PLVVRLEGTNV LGK+I Sbjct: 316 AFKIILSDPNVKGIFVNIFGGIMKCDVIANGIVEATKQVGLNLPLVVRLEGTNVELGKKI 375 Query: 361 LAGSGLNIVAAXXXXMADGARKIVALV 387 L SGLNI AA MADGA+KIV+LV Sbjct: 376 LEESGLNITAA--ESMADGAQKIVSLV 400 >C1P6R4.1 C1P6R4_BACCO Succinyl-CoA synthetase, beta subunit EC=6.2.1.5 Length = 386 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 282/387 (72%), Positives = 311/387 (80%), Gaps = 2/387 (0%) Query: 1 MNIHEYQGKEVLKKYGVAVPNGKXXXXXXXXXXXXXSLGTPVVVVKAQIHXXXXXXXXXX 60 MNIHEYQGKE+L+KYGVAVPNGK SLGT V VVKAQIH Sbjct: 1 MNIHEYQGKEILRKYGVAVPNGKVAFTVDEAVEAAKSLGTQVCVVKAQIHAGGRGKAGGV 60 Query: 61 XXXXSSEEVRAYAEEILGKTLITHQTGPEGKVVKRLLIEEGCQIVKEYYIGLVVDRGSGR 120 + +EVR YA+E+LGKTL+THQTGPEGK VKRLLIEEGC I KEYY+GLV+DR + R Sbjct: 61 KVAKNLDEVRTYAQELLGKTLVTHQTGPEGKEVKRLLIEEGCDIQKEYYVGLVLDRATSR 120 Query: 121 VVMMASEEGGTEIEEVAATHPEKIFKEIIDPAVGLQTFQARKLAYSIAIPTELVNKAVKF 180 VV+MASEEGGTEIEEVAA PEKIFKE IDPAVGL FQAR++A++I IP +LVN+AVKF Sbjct: 121 VVLMASEEGGTEIEEVAAKTPEKIFKETIDPAVGLLPFQARRIAFNINIPAKLVNQAVKF 180 Query: 181 MQALYLAFVDKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALFRHKDIXXXXXXXXXXV 240 M LY FV+KDCSIAEINPLVVTGDG VMALDAKLNFDSN LFR +D+ Sbjct: 181 MTGLYQVFVEKDCSIAEINPLVVTGDGKVMALDAKLNFDSNGLFRQQDVLAYRDLEEEDP 240 Query: 241 KEIEASKFDLSYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATTEKVTE 300 KEIEASK+DLSY+ALDGNIGCMVNGAGLAMATMDIIKYYGG+PANFLDVGGGAT EKVTE Sbjct: 241 KEIEASKYDLSYVALDGNIGCMVNGAGLAMATMDIIKYYGGDPANFLDVGGGATEEKVTE 300 Query: 301 AFKIILSDDKVNGIFVNIFGGIMRCDVIASGVVEAARQLGLTKPLVVRLEGTNVALGKEI 360 AFKIILSD+KV GIFVNIFGGIM+CDVIASGVV A +Q+GL PLVVRLEGTNV LGK+I Sbjct: 301 AFKIILSDEKVKGIFVNIFGGIMKCDVIASGVVAATKQVGLDIPLVVRLEGTNVELGKKI 360 Query: 361 LAGSGLNIVAAXXXXMADGARKIVALV 387 L SGL IVAA MADGA+KIV LV Sbjct: 361 LNESGLKIVAA--ESMADGAQKIVELV 385 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,963,461,189 Number of extensions: 76135190 Number of successful extensions: 191376 Number of sequences better than 1.0e-05: 1587 Number of HSP's gapped: 189358 Number of HSP's successfully gapped: 1590 Length of query: 387 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 249 Effective length of database: 1,760,596,133 Effective search space: 438388437117 Effective search space used: 438388437117 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)