BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0071.p (372 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIB3.1 B3KIB3_9BACI DNA protecting protein DprA 415 e-114 B1DLV8.1 B1DLV8_9BACL DNA protecting protein DprA 317 9e-85 C3XBJ6.1 C3XBJ6_OXAFO DNA processing protein 256 4e-66 B0K1T9.1 B0K1T9_THEPX DNA protecting protein DprA 255 4e-66 B0K9V6.1 B0K9V6_THEP3 DNA protecting protein DprA 254 7e-66 >B3KIB3.1 B3KIB3_9BACI DNA protecting protein DprA Length = 391 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/387 (55%), Positives = 269/387 (69%), Gaps = 18/387 (4%) Query: 4 RELLIGFNEVEGIGWKTIDRICREGLLTENAFFCSSEDWGRLGINAKIAHWLAAGF---- 59 R LLI +E EGIGWKTI+R+ G L E ++DW G+ + A+ LA F Sbjct: 5 RLLLIALHESEGIGWKTINRMVLNGELHEGLLSYDAQDWRACGLPVEKANKLAKEFPIAV 64 Query: 60 --------NPEWIYTR------CNLMKESGVAVVTLLDEDYPELLKESLEPPWVLYYRGR 105 N E + R NL + + ++T LD YP++LK S + PWVLY G Sbjct: 65 ERKRVELSNDEEVELRQVEDKVWNLTNRTKIRIITALDAVYPDMLKSSPQAPWVLYCIGD 124 Query: 106 LELASRPAVAMVGTRMPTAYGRKAGEMLAMELSAAGLTVVSGLARGIDSVCHEAALKNAG 165 L S P +AMVGTRMPT YGRK ML+ L+ AGL VVSG+ARGIDSV HE AL++ G Sbjct: 125 PHLLSTPGIAMVGTRMPTGYGRKVASMLSEALTRAGLMVVSGMARGIDSVVHETALRSGG 184 Query: 166 GTIAVVATGLDRVYPPENRALEQQISRQGLVISEYPLGTKSHPGLFPRRNRIIAGLTLGT 225 T+AV+ G+D +YPPENR+L ++I+ +GL+ISEYP GTK+ PG FP+RNRIIAGLTLGT Sbjct: 185 PTVAVLGAGIDVIYPPENRSLYEEIAAKGLIISEYPPGTKALPGFFPQRNRIIAGLTLGT 244 Query: 226 LVVEADTRSGSLITADAALEAGRDVFAIPGPITSPKSRGALDLIKQGAKLVTGAADIIEE 285 +VVEAD RSGSLITAD ALEAGRDVF++PGP+TSPKSRG LDLIKQGAK+VT A DIIEE Sbjct: 245 VVVEADARSGSLITADLALEAGRDVFSVPGPLTSPKSRGTLDLIKQGAKMVTEAGDIIEE 304 Query: 286 YRSYLPAKAANQGGNTSEATREEDGFREKKLTSEESHLYHILHQGPFTLDELLLRTGWDF 345 Y S+LP ++ A R+E LT++E +YH+L QGP +LDE++ T WDF Sbjct: 305 YDSWLPKGVSDTYNKERRAPRQERPDELAGLTNDERQIYHMLEQGPGSLDEMIECTRWDF 364 Query: 346 GHLHSVLLSLIIKKAVSQLPGAIYKVI 372 GHLHSVLLSLIIKK ++QLPGAIYK+I Sbjct: 365 GHLHSVLLSLIIKKQITQLPGAIYKII 391 >B1DLV8.1 B1DLV8_9BACL DNA protecting protein DprA Length = 371 Score = 317 bits (813), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 180/373 (48%), Positives = 238/373 (63%), Gaps = 16/373 (4%) Query: 2 ETRELLIGFNEVEGIGWKTIDRICREGLLTENAFFCSSEDWGRLGINAKIAHWLAAGFN- 60 + ++++I +E GIGW T+ + EN S DW +G A A +N Sbjct: 7 KCKQMVIMLHECSGIGWHTVQKAVAHKAW-ENVDGKSEADWMAIGFGRAQAEAAARRWNE 65 Query: 61 ----PEWIYTRCNLMKESGVAVVTLLDEDYPELLKESLEPPWVLYYRGRLELASRPAVAM 116 PE Y R + G AV+T DE+YPE L +PPWVLY G++EL RP++A+ Sbjct: 66 PYDWPESPYLRAQKL---GAAVITPYDEEYPEELHRIPQPPWVLYALGKVELLKRPSIAI 122 Query: 117 VGTRMPTAYGRKAGEMLAMELSAAGLTVVSGLARGIDSVCHEAALKNAGGTIAVVATGLD 176 VGTR P+AYGR L+ ELS GLTVVSGLARGIDS HEAAL+ G TIAV+A+ +D Sbjct: 123 VGTRNPSAYGRHTALSLSEELSRRGLTVVSGLARGIDSKAHEAALRGHGSTIAVLASPVD 182 Query: 177 RVYPPENRALEQQISRQGLVISEYPLGTKSHPGLFPRRNRIIAGLTLGTLVVEADTRSGS 236 YPPENR+L QQI R+GL++SE P+G+ HPG+FP RNR+IAGL+LGT+VVEA SGS Sbjct: 183 HCYPPENRSLYQQIVREGLILSESPVGSSLHPGMFPLRNRVIAGLSLGTIVVEAAKGSGS 242 Query: 237 LITADAALEAGRDVFAIPGPITSPKSRGALDLIKQGAKLVTGAADIIEEYRSYLPAKAAN 296 LITAD ALE GRDVFA+PGPI+SPKS G LI++GAKLV+ A I+EEY S+L K A Sbjct: 243 LITADQALEMGRDVFAVPGPISSPKSEGPNSLIREGAKLVSSADHILEEY-SWLEGKLA- 300 Query: 297 QGGNTSEATREEDGFREKKLTSEESHLYHILHQGPFTLDELLLRTGWDFGHLHSVLLSLI 356 + + +++EE + +L P T++EL T FGHL ++L++L Sbjct: 301 -----ALTKPKPASAVAASMSAEEQKIIDLLRDRPLTINELHQLTMIPFGHLSALLINLC 355 Query: 357 IKKAVSQLPGAIY 369 IK+ + Q PGA+Y Sbjct: 356 IKRKIEQQPGAVY 368 >C3XBJ6.1 C3XBJ6_OXAFO DNA processing protein Length = 375 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/359 (42%), Positives = 204/359 (56%), Gaps = 14/359 (3%) Query: 15 GIGWKTIDRICREGLLTENAFFCSSEDWGRLGINAKIAHWLAAGFNP---EWIYTRCNLM 71 G+G +T ++ L +N F E+ R+ ++ K+A L A +P E I + Sbjct: 23 GVGIQTAHKMLSAYGLPQNIFMTPYEEIARI-VSPKMADVLYAPVDPAITEQIDRTKEWL 81 Query: 72 KESGVAVVTLLDEDYPELLKESLEPPWVLYYRGRLELASRPAVAMVGTRMPTAYGRKAGE 131 +S V+TL D YP L E +PP +LY +GR+EL + P++A+VG+R T GR E Sbjct: 82 DDSSNMVLTLSDNRYPRQLLEIADPPLILYVKGRVELLTSPSIAIVGSRNATTQGRLDAE 141 Query: 132 MLAMELSAAGLTVVSGLARGIDSVCHEAALKNAGGTIAVVATGLDRVYPPENRALEQQIS 191 A LS GLT+VSGLA GID+ HE LK G T+AV+ TG D VYP NR L +I+ Sbjct: 142 EFAHSLSDTGLTIVSGLALGIDTAAHEGGLKGRGSTVAVIGTGADIVYPARNRELAHRIA 201 Query: 192 RQGLVISEYPLGTKSHPGLFPRRNRIIAGLTLGTLVVEADTRSGSLITADAALEAGRDVF 251 +G +ISE+PLG+ FPRRNR+I+GL+ G LVVEA RSGSLITA AA++ GRDVF Sbjct: 202 NEGCIISEFPLGSGPVASNFPRRNRVISGLSGGILVVEAAARSGSLITAKAAIDQGRDVF 261 Query: 252 AIPGPITSPKSRGALDLIKQGAKLVTGAADIIEEYRSYLPAKAANQGGNTSEATREEDGF 311 AIPG I SP SRG +LI+QGAKLV + DI+EE + + N S R ED F Sbjct: 262 AIPGSIHSPLSRGCHELIRQGAKLVESSQDILEELKHFQDIVV-----NQSSGERAEDEF 316 Query: 312 REKKLTSEESHLYHILHQGPFTLDELLLRTGWDFGHLHSVLLSLIIKKAVSQLPGAIYK 370 + E+ + + P D L R D L LL+L + V LPG Y+ Sbjct: 317 -----SDEQKLILAQMGYDPVDADILSERCDMDAASLSVELLNLELSGNVESLPGGFYR 370 >B0K1T9.1 B0K1T9_THEPX DNA protecting protein DprA Length = 362 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 148/360 (41%), Positives = 210/360 (58%), Gaps = 17/360 (4%) Query: 13 VEGIGWKTIDRICREGLLTENAFFCSSEDWGRLGINAKIAHWL--AAGFNPEWIYTRCNL 70 V+GIG+K+ ++ E + D + N K+ + A NP R Sbjct: 14 VKGIGYKSFVQLMEFFKTAEEVYKAKEIDIFKAIGNRKLVQNIIEAQKLNPFDYIERLQN 73 Query: 71 MKESGVAVVTLLDEDYPELLKESLEPPWVLYYRGRLELASRPAVAMVGTRMPTAYGRKAG 130 +K ++V TL +E+YP+ LK +PP VLY +G + L +AMVG+R T YG++ Sbjct: 74 LK---ISVYTLDEEEYPKELKNIYDPPPVLYLKGNINLKDNLCIAMVGSRNATFYGKQVA 130 Query: 131 EMLAMELSAAGLTVVSGLARGIDSVCHEAALKNAGGTIAVVATGLDRVYPPENRALEQQI 190 + LA ELS G+TVVSG+ARGIDS H ALK G TIAV+ G++ VYP EN+ L +QI Sbjct: 131 QKLAYELSERGITVVSGMARGIDSFSHIGALKERGKTIAVLGNGINIVYPRENKKLMEQI 190 Query: 191 SRQGLVISEYPLGTKSHPGLFPRRNRIIAGLTLGTLVVEADTRSGSLITADAALEAGRDV 250 S +GL++SE+PL P FP RNRII+GL+LG +VVEA +SGSL+TA ALE GR+V Sbjct: 191 SEKGLLVSEFPLDAPPLPQNFPLRNRIISGLSLGVVVVEAGIKSGSLLTAQFALEQGREV 250 Query: 251 FAIPGPITSPKSRGALDLIKQGAKLVTGAADIIEEYRSYLPAKAANQGGNTSEATREEDG 310 FA+PG ITS SRG +LIKQGAK+V G DI+EE+ N + + E Sbjct: 251 FAVPGNITSAYSRGTNELIKQGAKIVIGVEDILEEF---------NLREDVQQKIEENLI 301 Query: 311 FREKKLTSEESHLYHILHQGPFTLDELLLRTGWDFGHLHSVLLSLIIKKAVSQLPGAIYK 370 F LT EE +Y + + P ++E+ ++++L SL++K + +LPG Y+ Sbjct: 302 F---PLTEEEKEVYDFICEAPRDIEEIAGYVKIKISKVNAILSSLMLKGMIEKLPGNKYE 358 >B0K9V6.1 B0K9V6_THEP3 DNA protecting protein DprA Length = 362 Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 146/362 (40%), Positives = 212/362 (58%), Gaps = 21/362 (5%) Query: 13 VEGIGWKTIDRICREGLLTENAFFCSSEDWGRLGINAKIAHWL--AAGFNPEWIYTRCNL 70 V+GIG+K+ ++ E + D + N K+ + A NP + Sbjct: 14 VKGIGYKSFVQLMEFFKTAEGVYKAKEIDIFKAIGNRKLVQNIIEAQKLNP---FDYIER 70 Query: 71 MKESGVAVVTLLDEDYPELLKESLEPPWVLYYRGRLELASRPAVAMVGTRMPTAYGRKAG 130 ++ S ++V TL +E+YP+ LK +PP VLY +G + L +AMVG R T YG++ Sbjct: 71 LQNSKISVYTLEEEEYPKELKNIYDPPPVLYLKGNINLKDNLRIAMVGARNATFYGKQVA 130 Query: 131 EMLAMELSAAGLTVVSGLARGIDSVCHEAALKNAGGTIAVVATGLDRVYPPENRALEQQI 190 + LA ELS G+TVVSG+ARGIDS H ALK G TIAV+ G++ VYP EN+ L +QI Sbjct: 131 QKLAYELSERGITVVSGMARGIDSFSHIGALKGRGKTIAVLGNGINIVYPRENKKLMEQI 190 Query: 191 SRQGLVISEYPLGTKSHPGLFPRRNRIIAGLTLGTLVVEADTRSGSLITADAALEAGRDV 250 S +GL++SE+PL + P FP RNRII+GL+LG +V+EA +SGSL+TA ALE GR+V Sbjct: 191 SEEGLLVSEFPLDSPPLPQNFPLRNRIISGLSLGVVVIEAGIKSGSLLTAQFALEQGREV 250 Query: 251 FAIPGPITSPKSRGALDLIKQGAKLVTGAADIIEEYRSYLPAKAANQGGNTSEATRE--E 308 FA+PG ITS SRG +LIKQGAK+V G DI+EE+ N E ++ E Sbjct: 251 FAVPGNITSAYSRGTNELIKQGAKIVIGVEDILEEF-------------NLREDVQQKIE 297 Query: 309 DGFREKKLTSEESHLYHILHQGPFTLDELLLRTGWDFGHLHSVLLSLIIKKAVSQLPGAI 368 + LT EE +Y + + P ++E+ ++++L SL++K + +LPG Sbjct: 298 ENLM-SSLTEEEKEVYDFICEAPRDIEEIAGYVKIKISKVNAILSSLMLKGMIEKLPGNK 356 Query: 369 YK 370 Y+ Sbjct: 357 YE 358 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,196,879,929 Number of extensions: 91250657 Number of successful extensions: 246034 Number of sequences better than 1.0e-05: 1524 Number of HSP's gapped: 244415 Number of HSP's successfully gapped: 1524 Length of query: 372 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 235 Effective length of database: 1,770,017,148 Effective search space: 415954029780 Effective search space used: 415954029780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)