BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0069.p (460 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIB5.1 B3KIB5_9BACI Gid protein 769 0.0 B1DLW0.1 B1DLW0_9BACL Gid protein 737 0.0 C0ZFA9.1 TRMFO_BREBN Methylenetetrahydrofolate--tRNA-(uracil-5-)... 685 0.0 C5D8V6.1 C5D8V6_9BACI Gid protein 657 0.0 A7GRG2.1 TRMFO_BACCN Methylenetetrahydrofolate--tRNA-(uracil-5-)... 656 0.0 >B3KIB5.1 B3KIB5_9BACI Gid protein Length = 442 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/433 (83%), Positives = 402/433 (92%) Query: 9 LTDTAKVTVIGAGLAGSEAAWQIASRGVPVRLYEMRPVVKTPAHHTNQFAELVCSNSLRA 68 +TD+ +VTVIGAGLAGSEAAWQIASRGVPV LYEMRPVVKTPAHHT++FAELVCSNSLRA Sbjct: 1 MTDSQRVTVIGAGLAGSEAAWQIASRGVPVTLYEMRPVVKTPAHHTDKFAELVCSNSLRA 60 Query: 69 NGLGNAVGVLKEEMRRLNSLVLGAADRHAVPAGGALAVDRDGFSGEITSTLHNHPLVEVI 128 NGL NAVGVLKEEMR LNSLV+G+ADR++VPAGGALAVDRDGFSGEIT TLH HPL+EV+ Sbjct: 61 NGLTNAVGVLKEEMRMLNSLVIGSADRNSVPAGGALAVDRDGFSGEITETLHQHPLIEVV 120 Query: 129 NEELTHIPEEGIVVIATGPLTSPSLSAEIKGLLGEEYFYFYDAAAPIVEKDSIDMNKVYL 188 NEE+ HIPEEGIVVIATGPLTSP+LS++I+ L+GE+YFYFYDAAAPIVEKDSIDM+KVYL Sbjct: 121 NEEIQHIPEEGIVVIATGPLTSPALSSQIRELMGEDYFYFYDAAAPIVEKDSIDMSKVYL 180 Query: 189 ASRYDKGEAAYLNCPMTEEEFDRFYDALISAETAALKDFEKEIYFEGCMPIEIMMKRGKQ 248 ASRYDKGEAAYLNCPMTEEEFD FYDALI+AE A LK+FEKEIYFEGCMPIE+MMKRGKQ Sbjct: 181 ASRYDKGEAAYLNCPMTEEEFDAFYDALINAEVAQLKEFEKEIYFEGCMPIEVMMKRGKQ 240 Query: 249 TALFGPMKPVGLMNPHTGKLPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVFSLIPG 308 TALFGPMKPVGL+NPHTGKLPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKR+ S+IPG Sbjct: 241 TALFGPMKPVGLVNPHTGKLPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRIISMIPG 300 Query: 309 LENAEYVRYGVMHRNTFINSPKLLHPTYQMKGRERLFFAGQMTGVEGYVESAASGLIAGM 368 LENAE VRYGVMHRNTF+NSPKLL TYQ+K R L+ AGQMTGVEGYVESAASGLIAG+ Sbjct: 301 LENAEIVRYGVMHRNTFVNSPKLLEQTYQVKTRPNLYLAGQMTGVEGYVESAASGLIAGI 360 Query: 369 NAARAALGEEGLIFPQDTVLGSMPAYITSADPEHFQPMNANFGLLPKPEQRIRSKKEKNE 428 NAARAA G EG++FPQ++ +GSM YIT ADP++FQPMNANFGLLP E+RIR+KKEKNE Sbjct: 361 NAARAAQGREGIVFPQESTIGSMAYYITHADPDNFQPMNANFGLLPGLEKRIRNKKEKNE 420 Query: 429 LLAHRALDSLAGF 441 LA+RALD + F Sbjct: 421 ALANRALDGVRVF 433 >B1DLW0.1 B1DLW0_9BACL Gid protein Length = 443 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/427 (81%), Positives = 384/427 (89%) Query: 15 VTVIGAGLAGSEAAWQIASRGVPVRLYEMRPVVKTPAHHTNQFAELVCSNSLRANGLGNA 74 V VIGAGLAGSEAAWQI S+GVPV LYEMRP KTPAHHT FAELVCSNSLRANGL NA Sbjct: 7 VIVIGAGLAGSEAAWQIVSQGVPVILYEMRPETKTPAHHTKNFAELVCSNSLRANGLANA 66 Query: 75 VGVLKEEMRRLNSLVLGAADRHAVPAGGALAVDRDGFSGEITSTLHNHPLVEVINEELTH 134 VGVLKEEMRRLNSL+LG+ADRHAVPAGGALAVDRDGFSGE+T LH HPLVEV EE+T Sbjct: 67 VGVLKEEMRRLNSLILGSADRHAVPAGGALAVDRDGFSGEVTRLLHEHPLVEVRTEEVTD 126 Query: 135 IPEEGIVVIATGPLTSPSLSAEIKGLLGEEYFYFYDAAAPIVEKDSIDMNKVYLASRYDK 194 IPE+ IVVIATGPLT+PSLS +I+ LLGEEYFYFYDAAAPI+EKDSIDM+KVYLASRYDK Sbjct: 127 IPEDSIVVIATGPLTAPSLSEKIRNLLGEEYFYFYDAAAPIIEKDSIDMSKVYLASRYDK 186 Query: 195 GEAAYLNCPMTEEEFDRFYDALISAETAALKDFEKEIYFEGCMPIEIMMKRGKQTALFGP 254 GEAAYLNCPMTEEEF+ F++AL +AETAALKDFEKE+YFEGCMPIE+M RGKQT LFGP Sbjct: 187 GEAAYLNCPMTEEEFEIFHEALTTAETAALKDFEKEVYFEGCMPIEVMASRGKQTVLFGP 246 Query: 255 MKPVGLMNPHTGKLPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVFSLIPGLENAEY 314 MKPVGL+NPHTGKLP+AV+QLRQDNAAGTLYN+VGFQTHLKWGEQKRVFSLIPGLENAE+ Sbjct: 247 MKPVGLVNPHTGKLPHAVIQLRQDNAAGTLYNMVGFQTHLKWGEQKRVFSLIPGLENAEF 306 Query: 315 VRYGVMHRNTFINSPKLLHPTYQMKGRERLFFAGQMTGVEGYVESAASGLIAGMNAARAA 374 VR+GVMHRNTFINSP+++ PTYQ+K R LFFAGQMTGVEGYVESAASGLIAG NAAR A Sbjct: 307 VRFGVMHRNTFINSPRVMEPTYQLKNRSTLFFAGQMTGVEGYVESAASGLIAGFNAARLA 366 Query: 375 LGEEGLIFPQDTVLGSMPAYITSADPEHFQPMNANFGLLPKPEQRIRSKKEKNELLAHRA 434 G E L+ P+DT LGSM YIT+AD +HFQPMNANFGL P E RIR+KKEKNE +A+RA Sbjct: 367 RGLEPLVLPEDTTLGSMAHYITTADFKHFQPMNANFGLFPPLENRIRNKKEKNEAIANRA 426 Query: 435 LDSLAGF 441 LDSL F Sbjct: 427 LDSLERF 433 >C0ZFA9.1 TRMFO_BREBN Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase trmFO EC=2.1.1.74 Length = 437 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/427 (75%), Positives = 372/427 (87%), Gaps = 1/427 (0%) Query: 15 VTVIGAGLAGSEAAWQIASRGVPVRLYEMRPVVKTPAHHTNQFAELVCSNSLRANGLGNA 74 +TV+GAGLAGSEAAWQIA GV V+LYEMRP +TPAHHT++FAELVCSNSLRAN L NA Sbjct: 6 ITVVGAGLAGSEAAWQIAQAGVKVKLYEMRPKTQTPAHHTDKFAELVCSNSLRANTLTNA 65 Query: 75 VGVLKEEMRRLNSLVLGAADRHAVPAGGALAVDRDGFSGEITSTLHNHPLVEVINEELTH 134 VGVLKEEMRRLNS+++ +ADR AVPAGGALAVDR F+ +T + NHPLVEV++EE+T Sbjct: 66 VGVLKEEMRRLNSVIIDSADRCAVPAGGALAVDRHEFAAHVTDAVRNHPLVEVVSEEITE 125 Query: 135 IPEEGIVVIATGPLTSPSLSAEIKGLLGEEYFYFYDAAAPIVEKDSIDMNKVYLASRYDK 194 IP+ GIVVIATGPLTSP+LS ++K L GEEY YFYDAAAPI+EKDSIDMNKV++ASRYDK Sbjct: 126 IPD-GIVVIATGPLTSPALSTKLKELTGEEYLYFYDAAAPIIEKDSIDMNKVFVASRYDK 184 Query: 195 GEAAYLNCPMTEEEFDRFYDALISAETAALKDFEKEIYFEGCMPIEIMMKRGKQTALFGP 254 GEAAYLNCPMTEEEF+RFYDALISAET LK+FEKEI+FEGCMPIE++ KRG +T FGP Sbjct: 185 GEAAYLNCPMTEEEFNRFYDALISAETVPLKEFEKEIFFEGCMPIEVLAKRGHKTMTFGP 244 Query: 255 MKPVGLMNPHTGKLPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVFSLIPGLENAEY 314 MKPVGL++P TGK YAVVQLRQDN+A TLYN+VGFQTHLKW +QKRVFSLIPGLEN E Sbjct: 245 MKPVGLVDPRTGKKSYAVVQLRQDNSAATLYNIVGFQTHLKWPDQKRVFSLIPGLENCEI 304 Query: 315 VRYGVMHRNTFINSPKLLHPTYQMKGRERLFFAGQMTGVEGYVESAASGLIAGMNAARAA 374 VRYGVMHRNTFINSPKLL PTYQ K RE LFFAGQMTGVEGYVESAASGL+AG+NAAR A Sbjct: 305 VRYGVMHRNTFINSPKLLKPTYQYKDRETLFFAGQMTGVEGYVESAASGLLAGINAARLA 364 Query: 375 LGEEGLIFPQDTVLGSMPAYITSADPEHFQPMNANFGLLPKPEQRIRSKKEKNELLAHRA 434 GEE + P +T++GSM YIT+ADP+HFQPMNANFGL+P+ +RIR K+ KNE LA RA Sbjct: 365 KGEELIELPPETIMGSMARYITTADPKHFQPMNANFGLVPEWPERIRDKRLKNEKLAERA 424 Query: 435 LDSLAGF 441 LD++ F Sbjct: 425 LDTIQNF 431 >C5D8V6.1 C5D8V6_9BACI Gid protein Length = 440 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/441 (70%), Positives = 364/441 (82%), Gaps = 1/441 (0%) Query: 9 LTDTAKVTVIGAGLAGSEAAWQIASRGVPVRLYEMRPVVKTPAHHTNQFAELVCSNSLRA 68 + + V VIGAGLAGSEAAWQ+A+RG+ VRLYEMRPV +TPAHHT++FAELVCSNSLRA Sbjct: 1 MVNERTVNVIGAGLAGSEAAWQLANRGIHVRLYEMRPVKQTPAHHTDKFAELVCSNSLRA 60 Query: 69 NGLGNAVGVLKEEMRRLNSLVLGAADRHAVPAGGALAVDRDGFSGEITSTLHNHPLVEVI 128 N L NAVGVLKEEMRRLNS+++ AAD +VPAG ALAVDR F+ +T+ + HP V VI Sbjct: 61 NSLTNAVGVLKEEMRRLNSVIMKAADECSVPAGSALAVDRHEFAARVTNLVQGHPNVTVI 120 Query: 129 NEELTHIPEEGIVVIATGPLTSPSLSAEIKGLLGEEYFYFYDAAAPIVEKDSIDMNKVYL 188 EE+T IP G +IATGPLTS +LS +K L GEEY YFYDAAAPI+EK+SI+M+K Y+ Sbjct: 121 REEVTEIPS-GPTIIATGPLTSKALSERLKELTGEEYLYFYDAAAPIIEKESINMDKAYV 179 Query: 189 ASRYDKGEAAYLNCPMTEEEFDRFYDALISAETAALKDFEKEIYFEGCMPIEIMMKRGKQ 248 SRYDKGEAAY+NCPMTEEEFDRFY+ALISAET LK+FEKEIYFEGCMPIE+M +RGK+ Sbjct: 180 KSRYDKGEAAYINCPMTEEEFDRFYEALISAETVPLKEFEKEIYFEGCMPIEVMARRGKK 239 Query: 249 TALFGPMKPVGLMNPHTGKLPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVFSLIPG 308 T LFGPMKPVGL +P TGK PYAVVQLRQD+AAGTLYN+VGFQTHLKWG QK V LIPG Sbjct: 240 TLLFGPMKPVGLEDPRTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGPQKEVIRLIPG 299 Query: 309 LENAEYVRYGVMHRNTFINSPKLLHPTYQMKGRERLFFAGQMTGVEGYVESAASGLIAGM 368 LENAE VRYGVMHRNTFINSPKLL PTYQ K R+ LFFAGQMTGVEGYVESAASGL+AG+ Sbjct: 300 LENAEIVRYGVMHRNTFINSPKLLRPTYQYKERDDLFFAGQMTGVEGYVESAASGLVAGI 359 Query: 369 NAARAALGEEGLIFPQDTVLGSMPAYITSADPEHFQPMNANFGLLPKPEQRIRSKKEKNE 428 NAAR LG+E ++FP++T +GSM YITS +P HFQPMNANFGL E++I+ K+ +NE Sbjct: 360 NAARLVLGQELVVFPRETAIGSMAHYITSTNPNHFQPMNANFGLFAPLEEKIKDKQRRNE 419 Query: 429 LLAHRALDSLAGFAARTGLAY 449 A RALD++ F + Y Sbjct: 420 RYAQRALDTIQNFIKKDCKGY 440 >A7GRG2.1 TRMFO_BACCN Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase trmFO EC=2.1.1.74 Length = 434 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/430 (72%), Positives = 364/430 (84%), Gaps = 1/430 (0%) Query: 12 TAKVTVIGAGLAGSEAAWQIASRGVPVRLYEMRPVVKTPAHHTNQFAELVCSNSLRANGL 71 T V VIGAGLAGSEAA+QIA RG+ V LYEMRPV +TPAHHT++FAELVCSNSLRAN L Sbjct: 3 TQVVKVIGAGLAGSEAAYQIAKRGIQVHLYEMRPVKQTPAHHTDKFAELVCSNSLRANTL 62 Query: 72 GNAVGVLKEEMRRLNSLVLGAADRHAVPAGGALAVDRDGFSGEITSTLHNHPLVEVINEE 131 NAVGV+KEEMRR++S+++ AAD +VPAGGALAVDR F+ ++T + NHP V V+NEE Sbjct: 63 TNAVGVIKEEMRRMDSVIIRAADECSVPAGGALAVDRHEFAAKVTEYVKNHPNVTVMNEE 122 Query: 132 LTHIPEEGIVVIATGPLTSPSLSAEIKGLLGEEYFYFYDAAAPIVEKDSIDMNKVYLASR 191 +T IPE G VIATGPLTSP+L+A++K L GEEYFYFYDAAAPI+EKDSIDMNKVYL SR Sbjct: 123 ITEIPE-GPTVIATGPLTSPALAAQLKELTGEEYFYFYDAAAPIIEKDSIDMNKVYLKSR 181 Query: 192 YDKGEAAYLNCPMTEEEFDRFYDALISAETAALKDFEKEIYFEGCMPIEIMMKRGKQTAL 251 YDKGEAAYLNCPMTE+EF+RFYDALI+AET LK+FEKEI+FEGCMP+E+M RG+QT L Sbjct: 182 YDKGEAAYLNCPMTEDEFNRFYDALIAAETVPLKEFEKEIFFEGCMPVEVMAARGRQTLL 241 Query: 252 FGPMKPVGLMNPHTGKLPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVFSLIPGLEN 311 FGPMKPVGL +P TGK PYAVVQLRQD+AAGTLYN+VGFQTHLKWG QK V LIPGLEN Sbjct: 242 FGPMKPVGLEDPKTGKTPYAVVQLRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLEN 301 Query: 312 AEYVRYGVMHRNTFINSPKLLHPTYQMKGRERLFFAGQMTGVEGYVESAASGLIAGMNAA 371 AE VRYGVMHRNTFINSPKLL PTYQ K R+ LFFAGQMTGVEGYVESAASGL+AG+NAA Sbjct: 302 AEIVRYGVMHRNTFINSPKLLRPTYQYKHRDDLFFAGQMTGVEGYVESAASGLLAGINAA 361 Query: 372 RAALGEEGLIFPQDTVLGSMPAYITSADPEHFQPMNANFGLLPKPEQRIRSKKEKNELLA 431 R GEE ++ P T +GSM YITS + ++FQPMNANFGL E++I+ K+E+NE A Sbjct: 362 RLLKGEEPVVLPSVTAMGSMANYITSTNAKNFQPMNANFGLFAPLEKKIKKKQERNEAYA 421 Query: 432 HRALDSLAGF 441 RAL+++ F Sbjct: 422 TRALETIQNF 431 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,768,525,979 Number of extensions: 119753517 Number of successful extensions: 353572 Number of sequences better than 1.0e-05: 1702 Number of HSP's gapped: 351648 Number of HSP's successfully gapped: 1704 Length of query: 460 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 321 Effective length of database: 1,751,175,118 Effective search space: 562127212878 Effective search space used: 562127212878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)