BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0065.p (149 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIB9.1 B3KIB9_9BACI Flagellar basal-body rod protein FlgC 218 2e-55 B1DLW5.1 B1DLW5_9BACL Flagellar basal-body rod protein FlgC 205 1e-51 B7GGC2.1 B7GGC2_ANOFW Flagellar basal body rod protein FlgC 200 4e-50 C5D8W2.1 C5D8W2_9BACI Flagellar basal-body rod protein FlgC 184 3e-45 C0ZFA3.1 C0ZFA3_BREBN Flagellar basal-body rod protein FlgC 182 8e-45 >B3KIB9.1 B3KIB9_9BACI Flagellar basal-body rod protein FlgC Length = 149 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/150 (70%), Positives = 126/150 (84%), Gaps = 2/150 (1%) Query: 1 MNFGSSFGISASALTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLETNQNDS 60 MN +SFGI+ASALTAQRLRMDVISSNIANAETTRA + +G+AVPYRRK VV + Q +S Sbjct: 1 MNISNSFGINASALTAQRLRMDVISSNIANAETTRARIENGQAVPYRRKTVVFQPQQ-ES 59 Query: 61 FSNILNSKMN-SDGSQGVKVQSIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKEMVD 119 F +L ++MN + QGVKV + ED SPLK VYNP+HPDA+A+GYV+MPNVDITKEMVD Sbjct: 60 FEGLLRAQMNGQNAGQGVKVAQVREDQSPLKQVYNPTHPDANAEGYVFMPNVDITKEMVD 119 Query: 120 MLSASRSYDANVTMLNASKGMVTKALEIGR 149 ML+A+RSY+ANVT +NASK M+ KALEIGR Sbjct: 120 MLAATRSYEANVTAINASKAMIMKALEIGR 149 >B1DLW5.1 B1DLW5_9BACL Flagellar basal-body rod protein FlgC Length = 151 Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 101/138 (73%), Positives = 117/138 (84%), Gaps = 2/138 (1%) Query: 14 LTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLE-TNQNDSFSNILNSKMN-S 71 LTAQRLRMDVISSNIANAETTRA V+G+ VPY+RK+VVLE QN SFS++LN ++ + Sbjct: 14 LTAQRLRMDVISSNIANAETTRAGYVNGQFVPYKRKMVVLEPMTQNSSFSDLLNKQLEGT 73 Query: 72 DGSQGVKVQSIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKEMVDMLSASRSYDANV 131 G+QGVK IIED SP K VYNP+HPDADADGYV+MPNVD+ KEMVDM+SASRSY+ANV Sbjct: 74 SGAQGVKATRIIEDQSPTKLVYNPTHPDADADGYVHMPNVDVAKEMVDMISASRSYEANV 133 Query: 132 TMLNASKGMVTKALEIGR 149 T LNASK M TKALEIG+ Sbjct: 134 TALNASKAMFTKALEIGK 151 >B7GGC2.1 B7GGC2_ANOFW Flagellar basal body rod protein FlgC Length = 145 Score = 200 bits (508), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 96/144 (66%), Positives = 119/144 (82%), Gaps = 2/144 (1%) Query: 6 SFGISASALTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLETNQNDSFSNIL 65 SF +SASALTAQRLRMDVIS+N+AN +TTRA +VDGK PYRRK+VV++ N+ SFS+ L Sbjct: 4 SFNVSASALTAQRLRMDVISANMANVDTTRAKMVDGKWQPYRRKMVVMQPNE--SFSSFL 61 Query: 66 NSKMNSDGSQGVKVQSIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKEMVDMLSASR 125 N MN + GVKV IIED +P K VY+PSHPDAD +GYV +PNVD KEMVD++SA+R Sbjct: 62 NQAMNERSTGGVKVTEIIEDQTPFKLVYDPSHPDADENGYVQLPNVDPLKEMVDLMSATR 121 Query: 126 SYDANVTMLNASKGMVTKALEIGR 149 SY+ANVT+LNA+KGM+ KALEIG+ Sbjct: 122 SYEANVTVLNATKGMLMKALEIGK 145 >C5D8W2.1 C5D8W2_9BACI Flagellar basal-body rod protein FlgC Length = 150 Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 92/151 (60%), Positives = 116/151 (76%), Gaps = 3/151 (1%) Query: 1 MNFGSSFGISASALTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLETNQNDS 60 M+ S I+ASALTAQRLRMDVISSN+AN +TT A +V+G+ PYRRK VV+E Q + Sbjct: 1 MSIFQSLDITASALTAQRLRMDVISSNMANVDTTHARLVNGQWEPYRRKFVVMEPRQ-EG 59 Query: 61 FSNILNSKMNSDGS--QGVKVQSIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKEMV 118 FS L + MNS S GV+V I+ED +P K VY+PSHPDAD +GYV +PNVD KEMV Sbjct: 60 FSTYLQAAMNSRSSVGNGVRVTKIMEDQTPFKLVYDPSHPDADPNGYVRLPNVDPLKEMV 119 Query: 119 DMLSASRSYDANVTMLNASKGMVTKALEIGR 149 D++SA+RSY+ANVT+ NA+KGM+ KALEIG+ Sbjct: 120 DLMSATRSYEANVTVFNATKGMLMKALEIGK 150 >C0ZFA3.1 C0ZFA3_BREBN Flagellar basal-body rod protein FlgC Length = 152 Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 94/151 (62%), Positives = 109/151 (72%), Gaps = 4/151 (2%) Query: 1 MNFGSSFGISASALTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLETNQNDS 60 M+ SASALTA RLR+D ISSNIANAE TRA+ VDG PYRRK+V L N + Sbjct: 1 MSLFQGINTSASALTANRLRLDTISSNIANAEVTRANFVDGAWQPYRRKMVELSPQTNGT 60 Query: 61 FSNILNSKMN----SDGSQGVKVQSIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKE 116 F N L + + S G QGVKV +I ED++P K VY+PSHPDAD DGY+ MPNVD KE Sbjct: 61 FDNFLQAAVGTVSGSQGGQGVKVTAIQEDNTPFKRVYDPSHPDADQDGYLLMPNVDPMKE 120 Query: 117 MVDMLSASRSYDANVTMLNASKGMVTKALEI 147 MVDM+SASRSY+ANVT LNASK M+ KALEI Sbjct: 121 MVDMISASRSYEANVTALNASKAMMLKALEI 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.125 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 750,424,401 Number of extensions: 27322153 Number of successful extensions: 70907 Number of sequences better than 1.0e-05: 889 Number of HSP's gapped: 69943 Number of HSP's successfully gapped: 889 Length of query: 149 Length of database: 3,060,696,203 Length adjustment: 111 Effective length of query: 38 Effective length of database: 2,014,963,538 Effective search space: 76568614444 Effective search space used: 76568614444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 126 (53.1 bits)