BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0060.p (437 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIC4.1 B3KIC4_9BACI Flagellar protein export ATPase FliI EC=3.... 812 0.0 B1DLX0.1 B1DLX0_9BACL Flagellar protein export ATPase FliI EC=3.... 739 0.0 C0ZF97.1 C0ZF97_BREBN Flagellum-specific ATP synthase EC=3.6.3.14 624 e-177 A4IM97.1 A4IM97_GEOTN Flagellar-specific ATP synthase 556 e-156 B4BJ42.1 B4BJ42_9BACI Flagellar protein export ATPase FliI EC=3.... 556 e-156 >B3KIC4.1 B3KIC4_9BACI Flagellar protein export ATPase FliI EC=3.6.3.15 Length = 439 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/435 (91%), Positives = 417/435 (95%) Query: 2 LDSGRYKEQLRNFDPVRINGKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVVG 61 L+S RY + L++ DPVRINGKVTQVIGLMVESEGPDASIGDVCYIYP K +KPL+AEVVG Sbjct: 4 LNSARYMDHLKHLDPVRINGKVTQVIGLMVESEGPDASIGDVCYIYPTKQSKPLKAEVVG 63 Query: 62 FRDNKVLLMPLGELQAIGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARMP 121 FRDNKVLLMPLGEL +IGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGS+IPARMP Sbjct: 64 FRDNKVLLMPLGELHSIGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSIIPARMP 123 Query: 122 HSSTFNIPSNPLNRPRVQEPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARN 181 H ST N+P NPLNRPRVQEPISIGVRAIDGLL+IGKGQRVGIFAGSGVGKSTLMGMIARN Sbjct: 124 HYSTHNVPQNPLNRPRVQEPISIGVRAIDGLLSIGKGQRVGIFAGSGVGKSTLMGMIARN 183 Query: 182 TSADVNVIALIGERGREVLDFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATTIAE 241 TSADVNVIALIGERGREVLDFIERDLGPEGL+RSVV+VATSDQPALIRIKGALIATTIAE Sbjct: 184 TSADVNVIALIGERGREVLDFIERDLGPEGLKRSVVIVATSDQPALIRIKGALIATTIAE 243 Query: 242 YFRDRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTG 301 YFRDRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTG Sbjct: 244 YFRDRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTG 303 Query: 302 SITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMKDIA 361 SITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVL+SISRVMKDI+ Sbjct: 304 SITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVLASISRVMKDIS 363 Query: 362 PEEQIAAAENVKRLMAVYKDSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVNEKV 421 PEEQI A+ENVKRLMA+YKDSEDLINIGAYQ+GSNA IDESI YI IW+FTKQKVNEK Sbjct: 364 PEEQIDASENVKRLMAIYKDSEDLINIGAYQQGSNADIDESIEYIGRIWDFTKQKVNEKT 423 Query: 422 TLAEVQESLISQFSR 436 TL EVQE LIS+FSR Sbjct: 424 TLDEVQERLISEFSR 438 >B1DLX0.1 B1DLX0_9BACL Flagellar protein export ATPase FliI EC=3.6.3.15 Length = 441 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/433 (82%), Positives = 396/433 (91%) Query: 2 LDSGRYKEQLRNFDPVRINGKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVVG 61 LDS +Y +QLR+ DPVR+NGKVTQVIGL VESEGPDASIGDVC IYPAKG KP++AEVVG Sbjct: 6 LDSSKYMDQLRHLDPVRVNGKVTQVIGLTVESEGPDASIGDVCLIYPAKGAKPIKAEVVG 65 Query: 62 FRDNKVLLMPLGELQAIGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARMP 121 FRDNKV+LMPLGEL AI PGCDVVGTGKPLSVQVGSELLGKVLDGLG+PLDGS +P+RM Sbjct: 66 FRDNKVILMPLGELHAISPGCDVVGTGKPLSVQVGSELLGKVLDGLGKPLDGSFLPSRMQ 125 Query: 122 HSSTFNIPSNPLNRPRVQEPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARN 181 ST N PSNPL RPRVQE +SIGVRAIDGLLT+G+GQRVGIFAGSGVGKSTL+GMIARN Sbjct: 126 QYSTHNEPSNPLARPRVQETLSIGVRAIDGLLTVGRGQRVGIFAGSGVGKSTLLGMIARN 185 Query: 182 TSADVNVIALIGERGREVLDFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATTIAE 241 TSADVNVIALIGERGREVL+FIE+DLGPEGL RSVV+VATSDQPALIRIKGALIAT+IAE Sbjct: 186 TSADVNVIALIGERGREVLEFIEKDLGPEGLARSVVIVATSDQPALIRIKGALIATSIAE 245 Query: 242 YFRDRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTG 301 YFRDRGLNVMLMMDSVTRYAMAQREVGLA+GEPPA RGYTPSVFA+LPKLLERAGTGP G Sbjct: 246 YFRDRGLNVMLMMDSVTRYAMAQREVGLAIGEPPATRGYTPSVFATLPKLLERAGTGPNG 305 Query: 302 SITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMKDIA 361 SITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNR +ANKGHFPAIDVL+S+SRVMK+I Sbjct: 306 SITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNRQLANKGHFPAIDVLASVSRVMKEIV 365 Query: 362 PEEQIAAAENVKRLMAVYKDSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVNEKV 421 EE AA +K L++VY+DSEDLINIGAYQRG+N +ID +I ID+I+ FT+QK NEKV Sbjct: 366 TEEHQEAANELKMLLSVYRDSEDLINIGAYQRGTNEKIDTAIENIDAIYQFTRQKTNEKV 425 Query: 422 TLAEVQESLISQF 434 TLA+ +E L+ +F Sbjct: 426 TLADSKERLLQEF 438 >C0ZF97.1 C0ZF97_BREBN Flagellum-specific ATP synthase EC=3.6.3.14 Length = 439 Score = 624 bits (1609), Expect = e-177, Method: Compositional matrix adjust. Identities = 301/434 (69%), Positives = 362/434 (83%), Gaps = 1/434 (0%) Query: 1 MLDSGRYKEQLRNFDPVRINGKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVV 60 +LD +YK L DP+R+NGKVTQV+GL +ES+GP+ +G++C++YPA +P+ AEVV Sbjct: 3 ILDLSKYKHMLHGLDPMRVNGKVTQVVGLTIESQGPEVKLGEICHLYPANTKEPIIAEVV 62 Query: 61 GFRDNKVLLMPLGELQAIGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARM 120 GFR+NKVLLMPLGEL IGPGCDVV TG+ L V+VG E+LG +LDGLG+P GSL P + Sbjct: 63 GFRENKVLLMPLGELTEIGPGCDVVATGRSLDVKVGPEILGSILDGLGRPYQGSL-PFGL 121 Query: 121 PHSSTFNIPSNPLNRPRVQEPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIAR 180 T N+P NP+ RPR+QEP+S+GVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIAR Sbjct: 122 TSYPTNNMPPNPILRPRIQEPLSVGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIAR 181 Query: 181 NTSADVNVIALIGERGREVLDFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATTIA 240 NT+AD+NVI LIGERGREV++FIERDLG EGL+RSVVVVATSDQPA+IRIKGA+IAT+IA Sbjct: 182 NTTADINVIGLIGERGREVMEFIERDLGEEGLKRSVVVVATSDQPAMIRIKGAMIATSIA 241 Query: 241 EYFRDRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPT 300 EYFRDRG+NVMLMMDSVTR+AMAQREVGLA+GEPPA RGYTPSVFA LPKL+ERAGT Sbjct: 242 EYFRDRGMNVMLMMDSVTRFAMAQREVGLAIGEPPATRGYTPSVFAMLPKLMERAGTADK 301 Query: 301 GSITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMKDI 360 GSITAFYTVLVD DDMN+PIADAVRGILDGHIVL+R IA+KGHFPAIDV++S+SRVM +I Sbjct: 302 GSITAFYTVLVDSDDMNDPIADAVRGILDGHIVLDRKIAHKGHFPAIDVMASVSRVMNEI 361 Query: 361 APEEQIAAAENVKRLMAVYKDSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVNEK 420 + AA +K+ +A ++++EDLINIGAY+ GSN +ID +I Y D I FT Q +E Sbjct: 362 VDSNHLDAARQLKKHLATFREAEDLINIGAYKPGSNREIDAAIRYRDIISGFTAQGTHEP 421 Query: 421 VTLAEVQESLISQF 434 TL ++L + F Sbjct: 422 STLQGAIQALTAHF 435 >A4IM97.1 A4IM97_GEOTN Flagellar-specific ATP synthase Length = 423 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 276/415 (66%), Positives = 324/415 (78%) Query: 21 GKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVVGFRDNKVLLMPLGELQAIGP 80 GKV++VIGLM ES+GP++SIGD+CYI+ G + + AEVVGF + VLLMP + I P Sbjct: 6 GKVSRVIGLMTESKGPESSIGDLCYIHETSGGRKIPAEVVGFHEQHVLLMPFSSMAHIAP 65 Query: 81 GCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARMPHSSTFNIPSNPLNRPRVQE 140 GC V TGKPL V VG L+G VLD +G+PLDGS +P + S P NPL RP + E Sbjct: 66 GCLVEATGKPLEVYVGDALIGTVLDPIGRPLDGSALPLGLKPVSVERDPPNPLARPPIAE 125 Query: 141 PISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREVL 200 P+ +GVR ID LL +GKGQRVGIFAGSGVGKSTLMGMIAR TSADVNVIALIGERGREV Sbjct: 126 PLEVGVRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARRTSADVNVIALIGERGREVR 185 Query: 201 DFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTRY 260 +F+ERDLGPEGL RSVVVVATSDQPAL+R+KGA AT IAEYFRD+G +VMLMMDSVTR Sbjct: 186 EFLERDLGPEGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVTRV 245 Query: 261 AMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEPI 320 AMAQRE+GLAVGEPP +GYTPSVFA LPKLLERAGT +G+ITAFYTVLVDGDDMNEPI Sbjct: 246 AMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNEPI 305 Query: 321 ADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMKDIAPEEQIAAAENVKRLMAVYK 380 ADAVRGILDGH VL R +ANKG +PAI+VL S+SRVM I E AA V+RL++ Y Sbjct: 306 ADAVRGILDGHFVLERQLANKGQYPAINVLKSVSRVMPHIISAEHREAANRVRRLLSTYI 365 Query: 381 DSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVNEKVTLAEVQESLISQFS 435 DSEDLI IGAY+ GS+ +IDE+I + I F +Q+++EK T AE ++L S Sbjct: 366 DSEDLIQIGAYKHGSSREIDEAIQFYPQIMAFCRQEIDEKTTRAESIDALFRLVS 420 >B4BJ42.1 B4BJ42_9BACI Flagellar protein export ATPase FliI EC=3.6.3.14 Length = 423 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 276/415 (66%), Positives = 324/415 (78%) Query: 21 GKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVVGFRDNKVLLMPLGELQAIGP 80 GKV++VIGLM ES+GP++SIGD+CYI+ G + + AEVVGF + VLLMP + I P Sbjct: 6 GKVSRVIGLMTESKGPESSIGDLCYIHETSGGRKIPAEVVGFHEQHVLLMPFSSMAHIAP 65 Query: 81 GCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARMPHSSTFNIPSNPLNRPRVQE 140 GC V TGKPL V VG L+G VLD +G+PLDGS +P + S P NPL RP + E Sbjct: 66 GCLVEATGKPLEVYVGDALIGTVLDPIGRPLDGSALPLGLKPVSVERDPPNPLARPPIAE 125 Query: 141 PISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREVL 200 P+ +GVR ID LL +GKGQRVGIFAGSGVGKSTLMGMIAR TSADVNVIALIGERGREV Sbjct: 126 PLEVGVRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARRTSADVNVIALIGERGREVR 185 Query: 201 DFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTRY 260 +F+ERDLGPEGL RSVVVVATSDQPAL+R+KGA AT IAEYFRD+G +VMLMMDSVTR Sbjct: 186 EFLERDLGPEGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVTRV 245 Query: 261 AMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEPI 320 AMAQRE+GLAVGEPP +GYTPSVFA LPKLLERAGT +G+ITAFYTVLVDGDDMNEPI Sbjct: 246 AMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNEPI 305 Query: 321 ADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMKDIAPEEQIAAAENVKRLMAVYK 380 ADAVRGILDGH VL R +ANKG +PAI+VL S+SRVM I E AA V+RL++ Y Sbjct: 306 ADAVRGILDGHFVLERQLANKGQYPAINVLKSVSRVMPHIISAEHREAANRVRRLLSTYI 365 Query: 381 DSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVNEKVTLAEVQESLISQFS 435 DSEDLI IGAY+ GS+ +IDE+I + I F +Q+++EK T AE ++L S Sbjct: 366 DSEDLIQIGAYKHGSSREIDEAIQFYPQIMAFCRQEIDEKTTRAESIDALFRLVS 420 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,553,289,606 Number of extensions: 114198332 Number of successful extensions: 468795 Number of sequences better than 1.0e-05: 15604 Number of HSP's gapped: 424196 Number of HSP's successfully gapped: 15703 Length of query: 437 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 298 Effective length of database: 1,751,175,118 Effective search space: 521850185164 Effective search space used: 521850185164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)