BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0059.p
         (147 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIC5.1 B3KIC5_9BACI Flagellar export protein FliJ                   182   1e-44
B1DLX1.1 B1DLX1_9BACL Flagellar export protein FliJ                   135   1e-30
C0ZF96.1 C0ZF96_BREBN Flagellar FliJ protein                           57   7e-07

>B3KIC5.1 B3KIC5_9BACI Flagellar export protein FliJ
          Length = 147

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 113/146 (77%)

Query: 1   MRFHYTFQKVVDLKANEKTQAEWMLSSALGELQAQEKSLEDLLEQRRGLMLALQHAAEQK 60
           M+FHY FQK+VDLK+NEKTQAEWMLSSA+G+LQA+EKSL +L E R  +  A Q AA + 
Sbjct: 1   MKFHYAFQKIVDLKSNEKTQAEWMLSSAIGKLQAEEKSLNELYEMRDQMYRAQQEAASRC 60

Query: 61  TPMSKLREMQDYVDYLDHCIARKHSDISRAHVEVQHKQNHLSTKVLDEKVWLKAKDKAQT 120
            P+S++R +Q Y ++L+ CI RK  DI  AHV V  KQ  LS K+LDEKVWLKA+DK+Q 
Sbjct: 61  VPVSEIRNIQVYAEHLEECIERKRDDIRIAHVNVTKKQKVLSDKMLDEKVWLKARDKSQE 120

Query: 121 AFQQSMILREQNELDEMATVRFAMKS 146
            F+   +LREQNELDEMATVRFA+++
Sbjct: 121 KFRHESLLREQNELDEMATVRFAIRA 146


>B1DLX1.1 B1DLX1_9BACL Flagellar export protein FliJ
          Length = 149

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 101/140 (72%)

Query: 3   FHYTFQKVVDLKANEKTQAEWMLSSALGELQAQEKSLEDLLEQRRGLMLALQHAAEQKTP 62
           F Y +QK+VDLK++EKTQAEW LSSA+G LQA+E SL +L  +R         ++ +  P
Sbjct: 4   FRYAYQKIVDLKSSEKTQAEWQLSSAIGVLQAEELSLSELRMKRAEWENKQHESSSEAVP 63

Query: 63  MSKLREMQDYVDYLDHCIARKHSDISRAHVEVQHKQNHLSTKVLDEKVWLKAKDKAQTAF 122
           +++L+ MQ Y++YLD CIA K +D+ +A  +V++ + +L+ ++ DEKVWLKAK+ A+  F
Sbjct: 64  LAELQLMQHYLEYLDSCIASKLTDVKQAERKVEYNRTNLADRMKDEKVWLKAKEHAKDRF 123

Query: 123 QQSMILREQNELDEMATVRF 142
           +  M ++EQNELDEMAT RF
Sbjct: 124 RHVMQIKEQNELDEMATNRF 143


>C0ZF96.1 C0ZF96_BREBN Flagellar FliJ protein
          Length = 148

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%)

Query: 3   FHYTFQKVVDLKANEKTQAEWMLSSALGELQAQEKSLEDLLEQRRGLMLALQHAAEQKTP 62
           F +  QKV+DLK  EK QAEW    ++     +E  L  L E    + + LQ    Q   
Sbjct: 4   FQFHLQKVLDLKEKEKEQAEWAFGKSIQRKNEEEWKLSQLTEHHDEMTMRLQEVQMQTCS 63

Query: 63  MSKLREMQDYVDYLDHCIARKHSDISRAHVEVQHKQNHLSTKVLDEKVWLKAKDKAQTAF 122
            S+L  +  Y   +   I  +   +     +V+  Q+ L+ ++ + ++W + ++K+   F
Sbjct: 64  ASQLISITQYQQSVARSIQNQQRTLHGCEQDVERCQSRLTERMKESQLWQRLREKSLHQF 123

Query: 123 QQSMILREQNELDEMATVRFAMKS 146
                 REQ ELDE+ T  +  +S
Sbjct: 124 LDDQKQREQKELDEIGTQLYLRRS 147


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.126    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 724,533,232
Number of extensions: 24010883
Number of successful extensions: 96664
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 96691
Number of HSP's successfully gapped: 10
Length of query: 147
Length of database: 3,060,696,203
Length adjustment: 110
Effective length of query: 37
Effective length of database: 2,024,384,553
Effective search space: 74902228461
Effective search space used: 74902228461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)