BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0058.p (313 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIC6.1 B3KIC6_9BACI Putative uncharacterized protein 263 2e-68 B1DLX2.1 B1DLX2_9BACL Putative uncharacterized protein 177 8e-43 C0ZF95.1 C0ZF95_BREBN Putative uncharacterized protein 114 1e-23 Q65JM3.1 Q65JM3_BACLD YlxF 60 2e-07 Q2B7F8.1 Q2B7F8_9BACI Putative uncharacterized protein 58 1e-06 >B3KIC6.1 B3KIC6_9BACI Putative uncharacterized protein Length = 310 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/313 (45%), Positives = 195/313 (62%), Gaps = 5/313 (1%) Query: 1 VANNDMEFETEGSASKFEKFLFLMIPIIFXXXXXXXXXXXFNMDIRNNVLAIANKIPVVE 60 VA DM + E S FE+ L +++P IF F D+R+ +L +ANKIPVV+ Sbjct: 3 VARKDMPLDKEESGGGFERILLILVPAIFTIVLLGALAVFFRADVRDGLLEVANKIPVVK 62 Query: 61 KWVPDPPQSADEATDPKQQAEEQAASSDKTIKELKSQLAAQSEQLKKANEDTAAQATKAE 120 WVPDP + +E ++A++Q S++ TI ELK QLA + E L + E A Q K + Sbjct: 63 NWVPDPVLTPEE--QKLKEAKQQEESAEATIVELKKQLAEKEETLNEVTEQKATQENKVK 120 Query: 121 ALQKQIDGMKXXXXXXXXXXXXXDDPYVKQVKDLAKLYAGMKASKAAPIMENLTTDEMVQ 180 L+ QI+ M+ +D Y KQ+++L+KLYA M SKAAPIM+NLT +EMV Sbjct: 121 ELETQIESMQSTSTDGEAEE---EDAYTKQIRELSKLYADMSPSKAAPIMQNLTLEEMVL 177 Query: 181 IFSVMNNASKTAILEKMDPKKAADVSIKLKETTNSTDMAIAALQSRLKQDTGASTKTTAT 240 + S M ++++ AIL+KMDPK AAD ++ LK+ S D+AIAALQSRLK++ + + + Sbjct: 178 MLSQMKSSNRVAILQKMDPKTAADATMMLKDAETSEDLAIAALQSRLKKNDAEAAQKKTS 237 Query: 241 NNLDKEKLNQTFTSMPAADAATLLGSMYKISPDKVITILNTVSDTVRSSILGEMTKNDSA 300 NLDK +LNQTF M A+AA LL YKISP K +TILNTV D RS IL M+ D+ Sbjct: 238 ENLDKSQLNQTFAGMTPANAADLLMQTYKISPAKTMTILNTVDDATRSRILNAMSSKDAE 297 Query: 301 QTAKVVNRLMGGK 313 AK++NRLMG K Sbjct: 298 LAAKILNRLMGSK 310 >B1DLX2.1 B1DLX2_9BACL Putative uncharacterized protein Length = 301 Score = 177 bits (450), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 175/309 (56%), Gaps = 10/309 (3%) Query: 4 NDMEFETEGSASKFEKFLFLMIPIIFXXXXXXXXXXXFNMDIRNNVLAIANKIPVVEKWV 63 +DME E +G S FE+ +F M PI+F FN + RN +L I N IP ++ + Sbjct: 2 SDMEMEKQGY-SGFERLMFFMTPILFTIVLLGALYVLFNTETRNQMLEIGNSIPYLKDVL 60 Query: 64 PDPPQSADEATDPKQQAEEQAASSDKTIKELKSQLAAQSEQLKKANEDTAAQATKAEALQ 123 PDP + +A D + ++A+ + I EL++QL + +L + N+ A Q + +++Q Sbjct: 61 PDPKTADGKANDD----QLKSANMSRKIDELQAQLQEKEAELAQTNQTKATQEQELKSMQ 116 Query: 124 KQIDGMKXXXXXXXXXXXXXDDPYVKQVKDLAKLYAGMKASKAAPIMENLTTDEMVQIFS 183 QI+ +K D Y ++++LA +Y+ + SKAAPI++++T DEMV + Sbjct: 117 DQINSLKSSNEEKAAD----DAAYQAKIQELASMYSKITPSKAAPILQSMTMDEMVLVLD 172 Query: 184 VMNNASKTAILEKMDPKKAADVSIKLKETTNSTDMAIAALQSRLKQDTGASTKTTATNNL 243 M + ILEKM+P+ AAD ++ LK+T + D IAALQ+ LK+ TK ++ Sbjct: 173 SMRPDDRVRILEKMNPQTAADATMALKDTVTAKDRQIAALQAELKKAKPTETKQPSSQL- 231 Query: 244 DKEKLNQTFTSMPAADAATLLGSMYKISPDKVITILNTVSDTVRSSILGEMTKNDSAQTA 303 ++L+ TF +M A A LL M ISP KVI ILNTV D RS IL EM+ + TA Sbjct: 232 SSDQLSATFAAMDAKSAGELLIKMADISPSKVIRILNTVDDKTRSGILAEMSGINQKITA 291 Query: 304 KVVNRLMGG 312 +++++LM G Sbjct: 292 QLMSKLMAG 300 >C0ZF95.1 C0ZF95_BREBN Putative uncharacterized protein Length = 302 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 142/296 (47%), Gaps = 14/296 (4%) Query: 7 EFETEGSASKFEKFLFLM-IPIIFXXXXXXXXXXXFNMDIRNNVLAIANKIPVVEKWVPD 65 E + E ++E F +++ IP +F +++ VL AN IP VEK VPD Sbjct: 3 EIQEEREYGRWEWFFYMIVIPALFASLLGGVLLSLLGVNVLGTVLHWANSIPYVEKLVPD 62 Query: 66 PPQSADEATDPKQQAEEQAASSDKTIKELKSQLAAQSEQLKKANEDTAAQATKAEALQKQ 125 D A P E+ DK + L+ A +Q+ E++A + AL+KQ Sbjct: 63 -----DYAATP---GSEEKPDMDKQVATLQQDQAKNQQQITALKEESAKKDATIAALEKQ 114 Query: 126 IDGMKXXXXXXXXXXXXXDDPYVKQVKDLAKLYAGMKASKAAPIMENLTTDEMVQIFSVM 185 ID + ++ KQ DLAK+Y M AA I+ENL E V + + M Sbjct: 115 IDDVNKAMEDKRAT----EEERQKQFADLAKVYTTMSPKNAAAIIENLKLQESVAVMTKM 170 Query: 186 NNASKTAILEKMDPKKAADVSIKLKETTNSTDMAIAALQSRLKQDTGASTKTTATNNLDK 245 A + IL KM+PKKAAD+SI LK++ + D IAALQ R+ T A + T + Sbjct: 171 KPAQQADILAKMEPKKAADISILLKDSVVNKDDDIAALQQRVDVLTKALSDTREGSE-SA 229 Query: 246 EKLNQTFTSMPAADAATLLGSMYKISPDKVITILNTVSDTVRSSILGEMTKNDSAQ 301 E L +TFT +P ADAA ++ S+ + + I ++ + R+ L + +D Q Sbjct: 230 EDLMKTFTQLPPADAAAIIRSLMVTNSGQAIALMKDLPADKRAQTLSAIANDDKKQ 285 >Q65JM3.1 Q65JM3_BACLD YlxF Length = 203 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 18/201 (8%) Query: 11 EGSASKFEKFLF-LMIPIIFXXXXXXXXXXXFNMDIRNNVLAIANKIPVVEKWVPDPP-Q 68 E A KF+ FLF ++IP+IF ++ ++ A+KIPVV++ V + Q Sbjct: 4 EKKAGKFQTFLFVIVIPLIFLIVVAFVGMWLLGVNFQD----AASKIPVVKELVKNGEDQ 59 Query: 69 SADEATDPKQQAEEQAASSDKTIKELKSQLAAQSEQLKKANEDTAAQATKAEALQKQIDG 128 D AT +Q E +A KTI E KS++ + LK ++++ K +L+K Sbjct: 60 DIDHAT---KQQENKAEKLQKTIDEQKSEIETLTSDLKTSDQEIKRLKQKISSLEKT--- 113 Query: 129 MKXXXXXXXXXXXXXDDPYVKQVKDLAKLYAGMKASKAAPIMENLTTDEMVQIFSVMNNA 188 K D V K+Y M+++KAA I+ L +E + I ++ Sbjct: 114 EKDEKEQDKKNAEGQGDGKV------VKIYESMQSNKAAKILSELKEEEAINILDSLSKK 167 Query: 189 SKTAILEKMDPKKAADVSIKL 209 T IL KM P KAA + KL Sbjct: 168 KVTEILSKMSPDKAAVFTEKL 188 >Q2B7F8.1 Q2B7F8_9BACI Putative uncharacterized protein Length = 201 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 9 ETEGSASKFEKFLFLM-IPIIFXXXXXXXXXXXFNMDIRNNVLAIANKIPVVEKWVPDPP 67 ETE SKF+ F L+ IP++F ++ + +K+PV+ + + Sbjct: 7 ETEKKYSKFQMFFILVVIPLLFAIAVTLIILTVNGTNVFEAGRELGSKLPVISEMIDKEQ 66 Query: 68 QSADEATDPKQQAEEQAASSDK--TIKELKSQLAAQSEQLKKANEDTAAQATKAEALQKQ 125 +AD+ D ++ E AA D+ I+ L+SQL ++ ++++ NE + + LQ Q Sbjct: 67 SAADKEAD-QRIVELGAAIEDREAQIERLESQLESKDSEIEE-NE------LEKQQLQNQ 118 Query: 126 IDGMKXXXXXXXXXXXXXDDPYVKQVKDLAKLYAGMKASKAAPIMENLTTDEMVQIFSVM 185 ID + + + KD+ K Y M A AAPI+ + DE +QI S + Sbjct: 119 IDEL-----------LAIQEENKRAFKDIVKTYETMSAKNAAPILAQMNDDEALQILSNV 167 Query: 186 NNASKTAILEKMDPKKAA 203 + I+EKM P+ AA Sbjct: 168 KPDTLAGIMEKMLPEDAA 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.308 0.122 0.315 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,381,316,546 Number of extensions: 44159399 Number of successful extensions: 230310 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 230331 Number of HSP's successfully gapped: 14 Length of query: 313 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 178 Effective length of database: 1,788,859,178 Effective search space: 318416933684 Effective search space used: 318416933684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 131 (55.1 bits)