BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0057.p (426 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIC7.1 B3KIC7_9BACI Flagellar hook-length control protein 172 5e-41 B1DLX3.1 B1DLX3_9BACL Flagellar hook-length control protein 107 2e-21 C0ZF94.1 C0ZF94_BREBN Probable flagellar hook-length control pro... 90 3e-16 A6CQ94.1 A6CQ94_9BACI Putative uncharacterized protein 68 1e-09 A8VS07.1 A8VS07_9BACI Succinyl-CoA synthetase, beta subunit EC=6... 68 2e-09 >B3KIC7.1 B3KIC7_9BACI Flagellar hook-length control protein Length = 448 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 118/187 (63%), Gaps = 3/187 (1%) Query: 241 VITAGQLSLRGGITAPLKAVTPPVPVHQFASEMTSFITGKLEIVKKGGVAEATITLFPEN 300 +TAGQL+LR G +K PPVPV F++EMTSFI KLEIVK+ G EA I+L PE+ Sbjct: 264 TVTAGQLALRSGTQVAVKPAAPPVPVENFSNEMTSFIINKLEIVKQTGFTEARISLNPEH 323 Query: 301 LGQVDVKITMQNGHLVAQFLTEHAGAKDMLEQQMSQLRSALQHQGLQVEKLEVTQNNTPL 360 LGQVD+K+TMQNG L+AQF+T AK++++QQM+QLRSAL QGLQVEK+EVTQ++ P Sbjct: 324 LGQVDIKLTMQNGQLIAQFMTRSTDAKELIDQQMAQLRSALLAQGLQVEKIEVTQSSQP- 382 Query: 361 QSQYNXXXXXXXXXXXXXXXXXXXXXXXXXIGDAVLAAELNGEWKEWVASTQQDSHS-QG 419 S N DAVLAA L E +W+A Q D + Q Sbjct: 383 -SNANLYQDGRQPGSGQQQPQHRSKEKDRPSDDAVLAANLTEELNDWIAEHQADDENLQA 441 Query: 420 GSFSAKA 426 G+F+AKA Sbjct: 442 GTFTAKA 448 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 4/76 (5%) Query: 31 EKLDEDISSEPALMAALQGWLLQVSALLSGSAPSEGSTEAGSIPAETLSPLAQNPETLRF 90 + +D+ + +P+L+ LQ WL Q + LLSG+AP G+ +SPLA +P+T+RF Sbjct: 90 DTMDQALEEDPSLLQELQNWLTQANLLLSGTAPH----AQGNANGNDMSPLASHPDTIRF 145 Query: 91 AVQDELNSLVSLVKQA 106 AVQD ++ L S++ ++ Sbjct: 146 AVQDTISQLASMLSKS 161 >B1DLX3.1 B1DLX3_9BACL Flagellar hook-length control protein Length = 484 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/100 (58%), Positives = 68/100 (68%), Gaps = 3/100 (3%) Query: 255 APLKAVTPPVPVHQFASEMTSFITGKLEIVKKGGVAEATITLFPENLGQVDVKITMQNGH 314 AP+ V VPV FA M FI KL I G++EATI LFP+ LGQVDV+ITM NG Sbjct: 328 API--VQASVPVTDFADNMKDFIQ-KLNIKHGNGMSEATIQLFPKELGQVDVRITMHNGQ 384 Query: 315 LVAQFLTEHAGAKDMLEQQMSQLRSALQHQGLQVEKLEVT 354 L A F ++A AKD L+ QM+QLR ALQ QGL V+KLEVT Sbjct: 385 LTALFHADNASAKDALDNQMAQLRVALQQQGLSVDKLEVT 424 >C0ZF94.1 C0ZF94_BREBN Probable flagellar hook-length control protein Length = 405 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 5/97 (5%) Query: 264 VPVH-----QFASEMTSFITGKLEIVKKGGVAEATITLFPENLGQVDVKITMQNGHLVAQ 318 VP H Q ++T K+++ + GV EA + L P++LGQVDV IT QNG + AQ Sbjct: 247 VPTHHVNANQLTQQVTQLFVSKMQLTQHNGVHEAKLILNPQSLGQVDVTITSQNGVITAQ 306 Query: 319 FLTEHAGAKDMLEQQMSQLRSALQHQGLQVEKLEVTQ 355 F E KDML+ Q+ QLR+AL QGLQV++LEV Q Sbjct: 307 FHAETQAGKDMLDNQLPQLRAALTQQGLQVDRLEVNQ 343 >A6CQ94.1 A6CQ94_9BACI Putative uncharacterized protein Length = 447 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 268 QFASEMTSFITGKLEIVKKGGVAEATITLFPENLGQVDVKITMQNGHLVAQFLTEHAGAK 327 QF E + I GK ++V+ +++ I L+PE LG + +++ Q+G + A+ L AK Sbjct: 313 QFVKEFANII-GKSQMVQTPNMSKLLIKLYPEQLGSIRIELLQQDGIMTAKILASTKAAK 371 Query: 328 DMLEQQMSQLRSALQHQGLQVEKLEVTQNNTPLQSQ 363 D+L+ Q++ LR AL Q LQVEK+E+ Q T Q Q Sbjct: 372 DILDSQLTGLRQALNSQNLQVEKIEIAQTFTESQKQ 407 >A8VS07.1 A8VS07_9BACI Succinyl-CoA synthetase, beta subunit EC=6.2.1.5 Length = 432 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 51/72 (70%) Query: 287 GGVAEATITLFPENLGQVDVKITMQNGHLVAQFLTEHAGAKDMLEQQMSQLRSALQHQGL 346 G+ + +I L P++LG++D+++ M NG LVA+ +T + +D+L+ Q+ LR+A Q Q + Sbjct: 313 NGIQQMSIKLHPQSLGRLDIQVQMVNGALVARMMTSTSATRDLLDGQLQSLRAAFQSQNI 372 Query: 347 QVEKLEVTQNNT 358 QV+++EVTQ + Sbjct: 373 QVDRIEVTQQQS 384 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.307 0.123 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,912,620,049 Number of extensions: 65269877 Number of successful extensions: 186819 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 186841 Number of HSP's successfully gapped: 22 Length of query: 426 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 288 Effective length of database: 1,760,596,133 Effective search space: 507051686304 Effective search space used: 507051686304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 133 (55.8 bits)