BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0055.p
         (251 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIC8.1 B3KIC8_9BACI Flagellar hook capping protein                  157   7e-37
B1DLX4.1 B1DLX4_9BACL Flagellar hook capping protein                  111   6e-23
P23455.1 YLXG_BACSU FlaA locus uncharacterized protein ylxG           102   4e-20
A1HN34.1 A1HN34_9FIRM Flagellar hook capping protein                  101   6e-20
C5D8X1.1 C5D8X1_9BACI Flagellar hook capping protein                  100   9e-20

>B3KIC8.1 B3KIC8_9BACI Flagellar hook capping protein
          Length = 186

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 103/141 (73%), Gaps = 5/141 (3%)

Query: 5   TPPVSTPEQW-NYTTPDSTKKTTGNSTLGKDQFLKILITQLQNQDPMQPMEDKEFIAQMA 63
           T PVST   W NY   + + K      LGKDQFL ILITQL++QDP+QPM+D+EFIAQMA
Sbjct: 3   TDPVSTKNMWPNYAKGNISTKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMA 62

Query: 64  QFSSVEQLMNISTQMTAMNQSLGAVSGLIGKNITWM----DATTKESKSGNVDSIVVSSG 119
           QF+S+EQLMNI+TQ+TAM+QSLGA S LIGK I+WM    D +    KSG VDSI+V  G
Sbjct: 63  QFTSLEQLMNINTQLTAMSQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRDG 122

Query: 120 VQYAVVGKEKIALTDVTQIQN 140
           V YA VG+ +++L  + +I+N
Sbjct: 123 VHYAKVGENEVSLDQIVKIEN 143


>B1DLX4.1 B1DLX4_9BACL Flagellar hook capping protein
          Length = 182

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 89/140 (63%), Gaps = 7/140 (5%)

Query: 8   VSTPEQW-NYTTPD--STKKTTGNSTLGKDQFLKILITQLQNQDPMQPMEDKEFIAQMAQ 64
           VS+   W NY+T +  +  K T  + LGKD FL++L+TQL+NQDP+QP ++  FI QMAQ
Sbjct: 4   VSSKVMWPNYSTSNVKAAGKDTDKNALGKDAFLELLVTQLKNQDPLQPQDNAAFITQMAQ 63

Query: 65  FSSVEQLMNISTQMTAMNQSLGAVSGLIGKNITWM---DATTKESKSGNVDSIVVSSGVQ 121
           F+SVEQLMN+S Q++ +NQ+LG  S +IGK ++W    DA   +     V+SIV   G  
Sbjct: 64  FTSVEQLMNMSDQLSLLNQNLGTASSIIGKTVSWYELDDAGQTKLMYDAVNSIVSQDGTL 123

Query: 122 YAVVGKEK-IALTDVTQIQN 140
           YA    E  I L+DV  + +
Sbjct: 124 YAKFADETMIKLSDVVTVSD 143


>P23455.1 YLXG_BACSU FlaA locus uncharacterized protein ylxG
          Length = 140

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 75/114 (65%), Gaps = 4/114 (3%)

Query: 16  YTTPDSTKK-TTGNSTLGKDQFLKILITQLQNQDPMQPMEDKEFIAQMAQFSSVEQLMNI 74
           Y  P+ T   +T NS+LGKD+FLKIL+TQ+QNQDP+ P++DKEFI+QMA FSS+EQ+MN+
Sbjct: 8   YKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPIDDKEFISQMATFSSLEQMMNL 67

Query: 75  STQMTAM--NQS-LGAVSGLIGKNITWMDATTKESKSGNVDSIVVSSGVQYAVV 125
           +T MT    NQ         +GK ++W D  +   K+G V S+    G  Y V+
Sbjct: 68  NTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVL 121


>A1HN34.1 A1HN34_9FIRM Flagellar hook capping protein
          Length = 136

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 73/112 (65%), Gaps = 6/112 (5%)

Query: 28  NSTLGKDQFLKILITQLQNQDPMQPMEDKEFIAQMAQFSSVEQLMNISTQMTAMNQSLGA 87
           N  LGKD FLK+L+ QL+ QDPM+PMEDKEFIAQMAQFSS+EQ+ N+++ M  M      
Sbjct: 24  NDQLGKDDFLKLLVAQLRYQDPMKPMEDKEFIAQMAQFSSLEQIQNLNSTMVTMQ----- 78

Query: 88  VSGLIGKNITWMDATTKESKSGNVDSIVVSSGVQYAVVGKEKIALTDVTQIQ 139
             GLIGK + W +    E ++GNV ++ +S    Y VVG   + L+ +  ++
Sbjct: 79  AMGLIGKTVRWQNENGAE-QAGNVRAVKISDRQPYIVVGDTTVELSKIQVVE 129


>C5D8X1.1 C5D8X1_9BACI Flagellar hook capping protein
          Length = 140

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 71/105 (67%), Gaps = 10/105 (9%)

Query: 15  NYTTPDSTKKTTGNSTLGKDQFLKILITQLQNQDPMQPMEDKEFIAQMAQFSSVEQLMNI 74
           NY  P+   + TGN  LGKD FLKIL+ QLQNQDP+ PMEDKEFIAQMA FSS+EQ++NI
Sbjct: 13  NYKPPE---RKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMASFSSLEQMINI 69

Query: 75  STQM-----TAMNQSLGAVSGLIGKNITWMDATTKESKSGNVDSI 114
           S+ +     T  + +L   S  IGKN+ W +   + +KSG V S+
Sbjct: 70  SSMIEQFIKTQHDHALLRYSEWIGKNVYWQE--DENTKSGIVQSV 112


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.127    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,325,378,563
Number of extensions: 47422240
Number of successful extensions: 90766
Number of sequences better than 1.0e-05: 582
Number of HSP's gapped: 90742
Number of HSP's successfully gapped: 582
Length of query: 251
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 119
Effective length of database: 1,817,122,223
Effective search space: 216237544537
Effective search space used: 216237544537
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)