BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0054.p
         (39 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIC9.1 B3KIC9_9BACI Flagellar operon protein                         72   2e-11
B0THB0.1 B0THB0_HELMI Flagellar operon protein, putative               63   1e-08
B1DLX5.1 B1DLX5_9BACL Flagellar operon protein                         58   2e-07
A1AUK6.1 A1AUK6_PELPD Flagellar operon protein                         55   2e-06
B3EBG3.1 B3EBG3_GEOLS Flagellar operon protein                         55   3e-06

>B3KIC9.1 B3KIC9_9BACI Flagellar operon protein
          Length = 129

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)

Query: 1   MKDMALIVSVANRTVVTAMDGNSMKDNVFTQIDSAVIIS 39
           MKDMALIV++ NRTVVTAMDG +MKDNVFTQIDSAVIIS
Sbjct: 91  MKDMALIVNIPNRTVVTAMDGKAMKDNVFTQIDSAVIIS 129


>B0THB0.1 B0THB0_HELMI Flagellar operon protein, putative
          Length = 127

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 36/39 (92%)

Query: 1   MKDMALIVSVANRTVVTAMDGNSMKDNVFTQIDSAVIIS 39
           MKD+AL+VSV NRTV+TA+DG ++KDNVFT IDSAV+I+
Sbjct: 88  MKDLALVVSVKNRTVITAVDGKALKDNVFTNIDSAVVIT 126


>B1DLX5.1 B1DLX5_9BACL Flagellar operon protein
          Length = 124

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 34/39 (87%)

Query: 1   MKDMALIVSVANRTVVTAMDGNSMKDNVFTQIDSAVIIS 39
           MKD+A+IV+V +RTVVTAMDG  M+ NVFT IDSAVI+S
Sbjct: 86  MKDIAMIVNVPSRTVVTAMDGKQMQSNVFTNIDSAVILS 124


>A1AUK6.1 A1AUK6_PELPD Flagellar operon protein
          Length = 128

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 30/38 (78%)

Query: 1   MKDMALIVSVANRTVVTAMDGNSMKDNVFTQIDSAVII 38
           M D AL+VSV NRTVVTAMD   MK NVFT IDSAVII
Sbjct: 91  MGDAALVVSVKNRTVVTAMDRTQMKGNVFTNIDSAVII 128


>B3EBG3.1 B3EBG3_GEOLS Flagellar operon protein
          Length = 127

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 3   DMALIVSVANRTVVTAMDGNSMKDNVFTQIDSAVII 38
           + AL+VSV NRTVVTAMD N MK NVFT IDSAVI+
Sbjct: 92  EAALVVSVKNRTVVTAMDRNQMKGNVFTNIDSAVIL 127


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.127    0.318 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 152,114,458
Number of extensions: 2261327
Number of successful extensions: 5832
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5833
Number of HSP's successfully gapped: 12
Length of query: 39
Length of database: 3,060,696,203
Length adjustment: 13
Effective length of query: 26
Effective length of database: 2,938,223,008
Effective search space: 76393798208
Effective search space used: 76393798208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)