BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0052.p
         (63 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KID1.1 B3KID1_9BACI Flagellar FlbD family protein                    89   1e-16
B1DLL8.1 B1DLL8_9BACL Flagellar FlbD family protein                    68   2e-10
B2A354.1 B2A354_NATTJ Flagellar FlbD family protein                    60   9e-08
A1HN31.1 A1HN31_9FIRM Flagellar FlbD family protein                    56   1e-06
B0THB2.1 B0THB2_HELMI Flagellar protein                                55   2e-06

>B3KID1.1 B3KID1_9BACI Flagellar FlbD family protein
          Length = 74

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 53/63 (84%)

Query: 1  MFLNALLVEMVEESPDTYITLVTGKRLIVLEKADEVIRKIRDYNRDIGTYAATIKVQSME 60
          ++LNALL+EMVEE+PDTYITL+ GKR+IVLE A+E+I  ++ Y+ ++G + ATIKVQ +E
Sbjct: 12 LWLNALLIEMVEETPDTYITLINGKRMIVLESANEIIASVKAYHHEVGIHQATIKVQQLE 71

Query: 61 ELS 63
          E S
Sbjct: 72 EPS 74


>B1DLL8.1 B1DLL8_9BACL Flagellar FlbD family protein
          Length = 73

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query: 1  MFLNALLVEMVEESPDTYITLVTGKRLIVLEKADEVIRKIRDYNRDIGTYAATIKVQSME 60
          + +NALL+E++EE+PDT ITL TGK+ IV E A E+++ I+ Y R IG  AAT K++  E
Sbjct: 12 LMINALLIELIEETPDTIITLTTGKKFIVTESAAELVQLIQSYIRSIGVLAATQKIEQTE 71


>B2A354.1 B2A354_NATTJ Flagellar FlbD family protein
          Length = 80

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 46/61 (75%)

Query: 3  LNALLVEMVEESPDTYITLVTGKRLIVLEKADEVIRKIRDYNRDIGTYAATIKVQSMEEL 62
          +NA L+E VEE+PDT ITLVTG++++V E ++EVI  + +Y R +G + ATI+++   ++
Sbjct: 14 VNADLIEFVEETPDTVITLVTGRKVLVKETSEEVIDLVIEYRRRVGCHPATIQIKDKNQV 73

Query: 63 S 63
          +
Sbjct: 74 N 74


>A1HN31.1 A1HN31_9FIRM Flagellar FlbD family protein
          Length = 65

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 3  LNALLVEMVEESPDTYITLVTGKRLIVLEKADEVIRKIRDYNRDIG 48
          LNA L+E VEE+PDT ITL TGK+LIV E  +EV+R++ +Y R I 
Sbjct: 16 LNADLIETVEETPDTVITLTTGKKLIVEESMNEVVRRVMEYRRAIN 61


>B0THB2.1 B0THB2_HELMI Flagellar protein
          Length = 76

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 1  MFLNALLVEMVEESPDTYITLVTGKRLIVLEKADEVIRKIRDYNR 45
          + +NA L+E VE +PDT ITL TGK+++VLEK DEV+ K+  Y R
Sbjct: 12 LVINAELIEQVEATPDTIITLTTGKKIVVLEKPDEVVEKVIAYRR 56


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 303,680,519
Number of extensions: 8377386
Number of successful extensions: 28508
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 28509
Number of HSP's successfully gapped: 10
Length of query: 63
Length of database: 3,060,696,203
Length adjustment: 35
Effective length of query: 28
Effective length of database: 2,730,960,678
Effective search space: 76466898984
Effective search space used: 76466898984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)