BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0051.p
         (155 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KID2.1 B3KID2_9BACI Flagellar basal body-associated protein FliL     97   4e-19
B1DLL9.1 B1DLL9_9BACL Putative uncharacterized protein                 60   5e-08

>B3KID2.1 B3KID2_9BACI Flagellar basal body-associated protein FliL
          Length = 154

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 1/155 (0%)

Query: 1   MKKMLPWXXXXXXXXXXXXXXXXXXMDKIFPSDSNDVNTAVQSVETKKLSADEIVALTAE 60
           MKKMLPW                   DK+   D+     +  +    KLSADEIV +T+E
Sbjct: 1   MKKMLPWLITILLSITLIVLAIFLLSDKLL-GDNGKSQASANAAALSKLSADEIVKMTSE 59

Query: 61  ITDIKTNTADPDYILKVNIAFQLDXXXXXXXXXXXXXXXXTPLIIKAIADAKPEDLNGAS 120
           IT IKTN ADP+++ ++  AFQL+                 P+IIK +AD KPE LN + 
Sbjct: 60  ITGIKTNLADPEFVAQMAFAFQLNDKKAKEEFDKIKEIKIKPIIIKTLADTKPELLNDSK 119

Query: 121 GKDQFSSKLMNIINKNLTEGTITQLEFTDFVLASM 155
           G++QF +KL N+INK+LT G + Q+E T+ ++  +
Sbjct: 120 GREQFIAKLQNLINKSLTSGHLIQIEMTEVMIVGI 154


>B1DLL9.1 B1DLL9_9BACL Putative uncharacterized protein
          Length = 120

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 1   MKKMLPWXXXXXXXXXXXXXXXXXXMDKIFPSDSNDVNTAVQSVETKKLSADEIVALTAE 60
           MKKMLPW                  + K F +D++  +     V  K LSADE+V++T+E
Sbjct: 1   MKKMLPWLVTTLLAITLIAIVSII-LYKSFFNDTDKPDPEKAPVTVKHLSADELVSVTSE 59

Query: 61  ITDIKTNTADPDYILKVNIAFQLDXXXXXXXXXXXXXXXXTPLIIKAIADAKPEDLNG 118
           + D K N  D DY++ ++ AFQLD                 P+I + +AD    +LNG
Sbjct: 60  LKDFKRNLKDSDYVVVMSFAFQLDSKKTKEEFDKILEIEVRPIINRTVADLTAAELNG 117


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.129    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 582,153,705
Number of extensions: 16002290
Number of successful extensions: 41612
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 41622
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 3,060,696,203
Length adjustment: 116
Effective length of query: 39
Effective length of database: 1,967,858,463
Effective search space: 76746480057
Effective search space used: 76746480057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)