BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0050.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KID3.1 B3KID3_9BACI Flagellar motor switch protein FliM 587 e-166 B1DLM1.1 B1DLM1_9BACL Flagellar motor switch protein FliM 570 e-161 C0ZF89.1 C0ZF89_BREBN Flagellar motor switch protein FliM 459 e-127 Q2B7G5.1 Q2B7G5_9BACI Flagellar motor switch protein M 431 e-119 A8VS15.1 A8VS15_9BACI Heat shock protein HslVU, ATPase subunit HslU 420 e-115 >B3KID3.1 B3KID3_9BACI Flagellar motor switch protein FliM Length = 332 Score = 587 bits (1512), Expect = e-166, Method: Compositional matrix adjust. Identities = 282/332 (84%), Positives = 310/332 (93%) Query: 3 LVDVLSQNEIDALLAALSSGEMDADELKKEETQKKVRSYDFKRAVRFSKDHIRSLTRIHD 62 +VDVLSQNEIDALLAALSSGEMDA+ELKKEETQKK+RSYDFKRA+RFSKDHIRSLTRIH+ Sbjct: 1 MVDVLSQNEIDALLAALSSGEMDAEELKKEETQKKIRSYDFKRALRFSKDHIRSLTRIHE 60 Query: 63 NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVH 122 NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMT+LNIFEAEPL GRMV+EVH Sbjct: 61 NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTVLNIFEAEPLVGRMVLEVH 120 Query: 123 PNIAFAMLDRLLGGFGTAPSKINTLTEIETTIMERIFSRCFESLQEAWKTVLDISPRMEA 182 PNIA+AMLDRLLGG G APS I+++TEIET IMERIFSR F+SLQEAWKTVLDISPR+EA Sbjct: 121 PNIAYAMLDRLLGGTGIAPSSISSMTEIETIIMERIFSRAFDSLQEAWKTVLDISPRLEA 180 Query: 183 LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVLEPIMSRLSVHQWFVSEKK 242 LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVLEPIMS+LS HQWF+SEKK Sbjct: 181 LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVLEPIMSKLSAHQWFISEKK 240 Query: 243 VRDEIELEAIRSRVHRAQLPIVAELGESSLSIAEFLGLSVGDVISLNRTVDSGLSIKVGD 302 E++A++ RV +A+LPIVAELG S L+++EFLGLSVGDVISLN+ + GLSIKVGD Sbjct: 241 ASVPEEVDALKQRVSKAKLPIVAELGVSQLTVSEFLGLSVGDVISLNKPMHDGLSIKVGD 300 Query: 303 KLKFIGSPGMIKERVAVQIDEIVSEGVEDFDE 334 KLKFIGSPG IK+RVAVQIDEIV EG E+FDE Sbjct: 301 KLKFIGSPGTIKDRVAVQIDEIVIEGAEEFDE 332 >B1DLM1.1 B1DLM1_9BACL Flagellar motor switch protein FliM Length = 333 Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust. Identities = 273/329 (82%), Positives = 301/329 (91%) Query: 3 LVDVLSQNEIDALLAALSSGEMDADELKKEETQKKVRSYDFKRAVRFSKDHIRSLTRIHD 62 +VDVLSQNEIDALLAALSSGEMDADELKKEE +KVR YDFKRA RFSKDHIRSLTRIH+ Sbjct: 1 MVDVLSQNEIDALLAALSSGEMDADELKKEEVTRKVRVYDFKRATRFSKDHIRSLTRIHE 60 Query: 63 NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVH 122 NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMV+EVH Sbjct: 61 NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVH 120 Query: 123 PNIAFAMLDRLLGGFGTAPSKINTLTEIETTIMERIFSRCFESLQEAWKTVLDISPRMEA 182 PN+A+AMLDR+LGG G APSKIN LTEIET IMERIF+R FESLQEAWKTV+DISPR+EA Sbjct: 121 PNVAYAMLDRMLGGQGMAPSKINNLTEIETIIMERIFARAFESLQEAWKTVIDISPRLEA 180 Query: 183 LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVLEPIMSRLSVHQWFVSEKK 242 LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVV+EPIM RLS H WFVS+KK Sbjct: 181 LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVIEPIMPRLSAHHWFVSQKK 240 Query: 243 VRDEIELEAIRSRVHRAQLPIVAELGESSLSIAEFLGLSVGDVISLNRTVDSGLSIKVGD 302 R E+E + RV +A+LPIVAELGES ++I EFLGL+VGDVISLN+ +D GL IKVG+ Sbjct: 241 ERIPEEVEMLEQRVSKAKLPIVAELGESVITIKEFLGLAVGDVISLNKPIDDGLRIKVGE 300 Query: 303 KLKFIGSPGMIKERVAVQIDEIVSEGVED 331 KLKFIGSPG +K+R+AVQ+D +VSEG E+ Sbjct: 301 KLKFIGSPGSVKDRIAVQVDLVVSEGAEE 329 >C0ZF89.1 C0ZF89_BREBN Flagellar motor switch protein FliM Length = 331 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/328 (67%), Positives = 269/328 (82%) Query: 3 LVDVLSQNEIDALLAALSSGEMDADELKKEETQKKVRSYDFKRAVRFSKDHIRSLTRIHD 62 + +VLSQ+EIDALLAALSSGEMDA+ELKKEET++KV+ YDFKRA+RFSKD IR LTRIH+ Sbjct: 1 MAEVLSQSEIDALLAALSSGEMDANELKKEETERKVKVYDFKRALRFSKDQIRGLTRIHE 60 Query: 63 NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVH 122 N+AR LTTYFSAQLRTFVQI V V+QLPYDEFIRSIPKMTILNIFEA PLEGRMV+EV+ Sbjct: 61 NYARLLTTYFSAQLRTFVQITVASVDQLPYDEFIRSIPKMTILNIFEAPPLEGRMVLEVN 120 Query: 123 PNIAFAMLDRLLGGFGTAPSKINTLTEIETTIMERIFSRCFESLQEAWKTVLDISPRMEA 182 PNIA+ MLDRLLGG G P K+ LTEIETT+MER+F + ++ EAWK ++++ P E Sbjct: 121 PNIAYTMLDRLLGGQGAIPEKMGALTEIETTVMERVFGKALDTFHEAWKQIIELDPYQEG 180 Query: 183 LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVLEPIMSRLSVHQWFVSEKK 242 LE NPQFMQIVSPNE + +IS STKIGDTTGMINLC+PHVVLEPIM++LS WF +KK Sbjct: 181 LEMNPQFMQIVSPNEIVVVISFSTKIGDTTGMINLCLPHVVLEPIMTKLSGQYWFSKQKK 240 Query: 243 VRDEIELEAIRSRVHRAQLPIVAELGESSLSIAEFLGLSVGDVISLNRTVDSGLSIKVGD 302 RDE E + RV A+LPIVAE+G +++++ +FL L GDVI L++++D+ L IKVG+ Sbjct: 241 TRDEEERLRVEERVKVAKLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKLKIKVGN 300 Query: 303 KLKFIGSPGMIKERVAVQIDEIVSEGVE 330 LKF+G PG K RVAVQIDE++ EG E Sbjct: 301 HLKFLGQPGTHKGRVAVQIDEVIEEGEE 328 >Q2B7G5.1 Q2B7G5_9BACI Flagellar motor switch protein M Length = 332 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 264/327 (80%) Query: 5 DVLSQNEIDALLAALSSGEMDADELKKEETQKKVRSYDFKRAVRFSKDHIRSLTRIHDNF 64 +VLSQNEIDALL+A+S+GEMDADELKKE+++KKV+ YDFKRA+RFSKD +RSLTRIH+NF Sbjct: 4 EVLSQNEIDALLSAISTGEMDADELKKEQSEKKVKVYDFKRALRFSKDQVRSLTRIHENF 63 Query: 65 ARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPN 124 AR LTT+FSAQLRT+VQI+V +Q+PY+EFIRSIPKMTILN+FE PL+GR++MEV+PN Sbjct: 64 ARLLTTFFSAQLRTYVQISVASADQIPYEEFIRSIPKMTILNVFEVPPLDGRILMEVNPN 123 Query: 125 IAFAMLDRLLGGFGTAPSKINTLTEIETTIMERIFSRCFESLQEAWKTVLDISPRMEALE 184 IA+AM+DR++GG G++ +K++TLTEIET IM F R FE L+EAW T+ +I P + E Sbjct: 124 IAYAMMDRMMGGRGSSINKVDTLTEIETKIMSNTFERAFEHLREAWSTITEIDPFLAEFE 183 Query: 185 TNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVLEPIMSRLSVHQWFVSEKKVR 244 NPQF+Q+VSPNET+ +ISL+T IG+T+GMIN+CIPHVVLEPI+ +LSVH W +EKK R Sbjct: 184 INPQFLQMVSPNETVVVISLNTMIGETSGMINICIPHVVLEPIIPKLSVHYWMQTEKKER 243 Query: 245 DEIELEAIRSRVHRAQLPIVAELGESSLSIAEFLGLSVGDVISLNRTVDSGLSIKVGDKL 304 + EL + + +AQ+P+ AELG + +SI +FL L +GDVI LN+ +D L+IK+GD Sbjct: 244 EPEELGRLEDSIQKAQVPVSAELGSADISIQDFLMLDLGDVIELNQAIDRPLTIKIGDIP 303 Query: 305 KFIGSPGMIKERVAVQIDEIVSEGVED 331 KF G PG +++A+QI + + G D Sbjct: 304 KFTGQPGKANKKLAIQILDTLKGGDSD 330 >A8VS15.1 A8VS15_9BACI Heat shock protein HslVU, ATPase subunit HslU Length = 333 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/332 (59%), Positives = 260/332 (78%) Query: 3 LVDVLSQNEIDALLAALSSGEMDADELKKEETQKKVRSYDFKRAVRFSKDHIRSLTRIHD 62 + DVLSQ EIDALL+ALS+GEMDADELKKEETQKK+++YDFKRA+RFSKD IRSLTRIH+ Sbjct: 1 MADVLSQGEIDALLSALSTGEMDADELKKEETQKKIKTYDFKRALRFSKDQIRSLTRIHE 60 Query: 63 NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVH 122 NFAR LTT SAQLRTFVQI+V V+QLPYDEFIRS+PK TILN+FE PL+GR V+EV+ Sbjct: 61 NFARLLTTQLSAQLRTFVQISVASVDQLPYDEFIRSVPKQTILNVFEPYPLDGRFVLEVN 120 Query: 123 PNIAFAMLDRLLGGFGTAPSKINTLTEIETTIMERIFSRCFESLQEAWKTVLDISPRMEA 182 PNIA+AMLDR+LGG G A +K++ LTEIE IM ++F R E+ +EAW +V +I P M+ Sbjct: 121 PNIAYAMLDRMLGGQGEAYNKVDNLTEIEAKIMTQLFQRTLETFREAWLSVEEIDPMMDD 180 Query: 183 LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVLEPIMSRLSVHQWFVSEKK 242 LE NPQF+Q+VSPNET+ +IS ST IG+++GMIN+C+PHVV+EP++ +LSVH W ++KK Sbjct: 181 LEVNPQFLQLVSPNETVVVISFSTTIGESSGMINICLPHVVIEPLLPKLSVHLWMQTKKK 240 Query: 243 VRDEIELEAIRSRVHRAQLPIVAELGESSLSIAEFLGLSVGDVISLNRTVDSGLSIKVGD 302 R E+EA+ + RA L + +LG+S ++I EF+ L+VGD I LN+++D L + VG Sbjct: 241 ERKPGEIEALELNIKRAPLDVAVQLGQSEITIEEFVHLAVGDTIELNQSIDELLRMTVGG 300 Query: 303 KLKFIGSPGMIKERVAVQIDEIVSEGVEDFDE 334 K+ PG +KE +AVQI E + E +DE Sbjct: 301 SPKYKVQPGKVKEHLAVQIVEDIEEEELLYDE 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,732,858,671 Number of extensions: 64810319 Number of successful extensions: 261658 Number of sequences better than 1.0e-05: 752 Number of HSP's gapped: 260189 Number of HSP's successfully gapped: 752 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)