BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0048.p
         (114 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KID5.1 B3KID5_9BACI Response regulator receiver                     221   2e-56
B1DLM3.1 B1DLM3_9BACL Response regulator receiver protein             212   8e-54
B7GG32.1 B7GG32_ANOFW Chemotaxis response regulator CheY              207   3e-52
C3J412.1 C3J412_9BACI Response regulator receiver protein             205   9e-52
B7YA97.1 B7YA97_9BACI Response regulator receiver protein             205   9e-52

>B3KID5.1 B3KID5_9BACI Response regulator receiver
          Length = 121

 Score =  221 bits (562), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/114 (97%), Positives = 113/114 (99%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDAAFMRMMIRDIL KNGFEVVGEAQDG+QAIEKFKELRPDLITMDITMPEMDGIAALK
Sbjct: 8   VDDAAFMRMMIRDILVKNGFEVVGEAQDGAQAIEKFKELRPDLITMDITMPEMDGIAALK 67

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLGV 114
           EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQ+DRVIEAINKTLGV
Sbjct: 68  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQSDRVIEAINKTLGV 121


>B1DLM3.1 B1DLM3_9BACL Response regulator receiver protein
          Length = 120

 Score =  212 bits (540), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 103/113 (91%), Positives = 111/113 (98%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDAAFMRMMIRDIL+KNG+EVVGEAQDG+QA+EK+KEL+PDLITMDITMPEMDGI+ALK
Sbjct: 8   VDDAAFMRMMIRDILTKNGYEVVGEAQDGAQAVEKYKELKPDLITMDITMPEMDGISALK 67

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG 113
           EIKK+D NAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAI KTLG
Sbjct: 68  EIKKLDGNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIKKTLG 120


>B7GG32.1 B7GG32_ANOFW Chemotaxis response regulator CheY
          Length = 119

 Score =  207 bits (527), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 100/113 (88%), Positives = 108/113 (95%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDAAFMRMMI+DIL+KNG EVV EA DG+QA+EK+KE RPDL+TMDITMPEMDGI ALK
Sbjct: 7   VDDAAFMRMMIKDILTKNGHEVVAEAADGAQAVEKYKEFRPDLVTMDITMPEMDGITALK 66

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG 113
           EIKK+D+NAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG
Sbjct: 67  EIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG 119


>C3J412.1 C3J412_9BACI Response regulator receiver protein
          Length = 119

 Score =  205 bits (522), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 108/113 (95%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDAAFMRMMI+DIL+KNG EVV EA DG QAIEK+KE RPD++TMDITMPEMDGIAALK
Sbjct: 7   VDDAAFMRMMIKDILTKNGHEVVAEAADGRQAIEKYKETRPDVVTMDITMPEMDGIAALK 66

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG 113
           EIKK+D+NAKVIMCSAMGQQAMVIDAIQAGAKDF+VKPFQADRVIEAINKT+G
Sbjct: 67  EIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFVVKPFQADRVIEAINKTIG 119


>B7YA97.1 B7YA97_9BACI Response regulator receiver protein
          Length = 119

 Score =  205 bits (522), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 108/113 (95%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDAAFMRMMI+DIL+KNG EVV EA DG QAIEK+KE RPD++TMDITMPEMDGIAALK
Sbjct: 7   VDDAAFMRMMIKDILTKNGHEVVAEAADGRQAIEKYKETRPDVVTMDITMPEMDGIAALK 66

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG 113
           EIKK+D+NAKVIMCSAMGQQAMVIDAIQAGAKDF+VKPFQADRVIEAINKT+G
Sbjct: 67  EIKKIDSNAKVIMCSAMGQQAMVIDAIQAGAKDFVVKPFQADRVIEAINKTIG 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 566,603,773
Number of extensions: 18731430
Number of successful extensions: 139329
Number of sequences better than 1.0e-05: 22599
Number of HSP's gapped: 140988
Number of HSP's successfully gapped: 22628
Length of query: 114
Length of database: 3,060,696,203
Length adjustment: 81
Effective length of query: 33
Effective length of database: 2,297,593,988
Effective search space: 75820601604
Effective search space used: 75820601604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)