BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0047.p
         (175 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KID6.1 B3KID6_9BACI Putative uncharacterized protein                175   2e-42
B1DLM4.1 B1DLM4_9BACL Flagellar protein                                94   4e-18
B1HQX2.1 B1HQX2_LYSSC Flagellar biosynthetic protein fliZ              74   6e-12
A3IF15.1 A3IF15_9BACI Flagellar protein                                73   8e-12
A8VS19.1 A8VS19_9BACI Flagellar basal-body rod protein FlgC            64   5e-09

>B3KID6.1 B3KID6_9BACI Putative uncharacterized protein
          Length = 174

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 107/131 (81%)

Query: 36  RFLGRRNQTLMSGRSIRTLGALGLGPNKSIQIIELGGSLYLIGVGENISMMDKITDPAEV 95
           RFLGR+NQ+ M GRSIRTLGA+G+GPNKS+Q++E+GGS+Y+IGVGE++ ++DKI+DPAEV
Sbjct: 40  RFLGRKNQSWMQGRSIRTLGAVGMGPNKSLQLVEIGGSIYVIGVGEDVRLVDKISDPAEV 99

Query: 96  ALIISAFEDQSAGQNNFLAPFIAKVRAKFRGEVPSQEIELNETSSFYETLQSKLALAPER 155
           ALI +AFE  S   N  L PFI K+ AK R + P +E+EL++TSSF+E  +SKL   P R
Sbjct: 100 ALIQAAFEQDSGIHNGALPPFITKLAAKLRKDKPPEEMELDDTSSFHEVFESKLRSVPNR 159

Query: 156 KEKMEELLRDD 166
           KEK+EELLR+D
Sbjct: 160 KEKVEELLRED 170


>B1DLM4.1 B1DLM4_9BACL Flagellar protein
          Length = 196

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 87/135 (64%), Gaps = 5/135 (3%)

Query: 36  RFLGRRNQTLMSGRSIRTLGALGLGPNKSIQIIELGGSLYLIGVGENISMMDKITDPAEV 95
           +FL +RN+   + R++R+LG + LG N S+Q++EL G LY++GVGEN++++DKI D  +V
Sbjct: 52  KFLSQRNRMWGTNRAVRSLGGVALGQNNSLQVVELSGRLYVVGVGENVTLLDKIDDEKQV 111

Query: 96  ALIISAFEDQS--AGQN-NFLAPFIAKVRAK--FRGEVPSQEIELNETSSFYETLQSKLA 150
             I+++ + QS  AG + N ++ F+ + R +    GE  ++E    + SSF   L   L+
Sbjct: 112 QAILASLDRQSHAAGWSANTISDFLKRFRKEESRTGEDLTEEQWNMQQSSFQSLLNQNLS 171

Query: 151 LAPERKEKMEELLRD 165
              +RKE++E LL++
Sbjct: 172 KQADRKEQLESLLKE 186


>B1HQX2.1 B1HQX2_LYSSC Flagellar biosynthetic protein fliZ
          Length = 226

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 36  RFLGRRNQTLMSGRSIRTLGALGLGPNKSIQIIELGGSLYLIGVGENISMMDKITDPAEV 95
           +FL +RN      + I+ LG L LG  KS+Q++++G ++YL+GVGE++ ++ +ITDP E+
Sbjct: 93  KFLNKRNLNFQRNQMIQNLGGLSLGAQKSVQLLQVGKTMYLVGVGEDVQLLREITDPEEI 152

Query: 96  ALIISAFEDQSAGQNNFLAPFIAKVRAKFR 125
             +++ + ++        +P+IA+V +KF+
Sbjct: 153 EALLALYNERQELAAT--SPYIAEVFSKFK 180


>A3IF15.1 A3IF15_9BACI Flagellar protein
          Length = 226

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 36  RFLGRRNQTLMSGRSIRTLGALGLGPNKSIQIIELGGSLYLIGVGENISMMDKITDPAEV 95
           +FL +RN      + I+ LG L LG  KS+Q++++G ++YL+GVGE++ ++ +ITDP E+
Sbjct: 93  KFLNKRNLNFQRNQLIQNLGGLSLGAQKSVQLLQVGKTMYLVGVGEDVQLLREITDPEEI 152

Query: 96  ALIISAFEDQSAGQNNFLAPFIAKVRAKFR 125
             +++ + ++        +P+IA+V +KF+
Sbjct: 153 EALLALYNERQELAAT--SPYIAEVFSKFK 180


>A8VS19.1 A8VS19_9BACI Flagellar basal-body rod protein FlgC
          Length = 234

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 43/60 (71%)

Query: 36  RFLGRRNQTLMSGRSIRTLGALGLGPNKSIQIIELGGSLYLIGVGENISMMDKITDPAEV 95
           RF+  R ++  + R+I+TLG  G+G N+S+QI+ +G  + ++GVGE + ++ +ITDP EV
Sbjct: 109 RFMNNRTRSFQANRTIQTLGGTGVGQNRSVQIVRVGDRILVVGVGETVQLLREITDPEEV 168


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.135    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 817,712,290
Number of extensions: 28383462
Number of successful extensions: 80576
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 80583
Number of HSP's successfully gapped: 17
Length of query: 175
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 49
Effective length of database: 1,873,648,313
Effective search space: 91808767337
Effective search space used: 91808767337
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)