BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0045.p
         (89 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KID8.1 B3KID8_9BACI Flagellar biosynthetic protein FliQ             118   1e-25
B1DLM6.1 B1DLM6_9BACL Flagellar biosynthetic protein FliQ             106   5e-22
P35535.1 FLIQ_BACSU Flagellar biosynthetic protein fliQ                99   2e-19
C1PV91.1 C1PV91_ALIAC Flagellar biosynthetic protein FliQ              98   3e-19
B7DMH1.1 B7DMH1_9BACL Flagellar biosynthetic protein FliQ              98   3e-19

>B3KID8.1 B3KID8_9BACI Flagellar biosynthetic protein FliQ
          Length = 89

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 69/89 (77%)

Query: 1  MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60
          M+ EFIIGLAGQAVY+VL+ SAPM           SIFQATTQIQEQTLAF+PKI+ VL+
Sbjct: 1  MSAEFIIGLAGQAVYIVLQVSAPMLVLALVVGLIISIFQATTQIQEQTLAFVPKIIIVLV 60

Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYIG 89
          ALLLFGPWI+T LVDFT  IL +L  YIG
Sbjct: 61 ALLLFGPWILTTLVDFTHGILDNLYKYIG 89


>B1DLM6.1 B1DLM6_9BACL Flagellar biosynthetic protein FliQ
          Length = 89

 Score =  106 bits (265), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 1  MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60
          M+ +FIIGLAGQA+  VL+ SAPM           SIFQATTQIQEQTLAF+PKIVAV +
Sbjct: 1  MSADFIIGLAGQAISTVLKASAPMLVLALVVGLIISIFQATTQIQEQTLAFVPKIVAVFV 60

Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYIG 89
          +L++FGPWI+  +VDFT  +L +L  YIG
Sbjct: 61 SLIIFGPWILNVIVDFTYNLLNNLYKYIG 89


>P35535.1 FLIQ_BACSU Flagellar biosynthetic protein fliQ
          Length = 89

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 64/89 (71%)

Query: 1  MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60
          M++EF+I +A +AVY+ L  S P+           SIFQATTQIQEQTLAFIPKIVAVLL
Sbjct: 1  MSSEFVISMAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLL 60

Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYIG 89
          AL+ FGPW+++ ++ FT ++  +LN + G
Sbjct: 61 ALIFFGPWMLSTILSFTTELFSNLNRFAG 89


>C1PV91.1 C1PV91_ALIAC Flagellar biosynthetic protein FliQ
          Length = 89

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 64/88 (72%)

Query: 1  MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60
          M   ++IGLA Q ++LV++ +AP+           SIFQATTQ+QEQTLAFIPKI+AV++
Sbjct: 1  MTDTYVIGLAAQVMWLVVKITAPVLLLGLAMGLVVSIFQATTQLQEQTLAFIPKIIAVVI 60

Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYI 88
          ALL FGPW++  L+DFT  ILG+L  Y+
Sbjct: 61 ALLAFGPWMLQNLIDFTNSILGNLMQYV 88


>B7DMH1.1 B7DMH1_9BACL Flagellar biosynthetic protein FliQ
          Length = 89

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 64/88 (72%)

Query: 1  MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60
          M   ++IGLA Q ++LV++ +AP+           SIFQATTQ+QEQTLAFIPKI+AV++
Sbjct: 1  MTDTYVIGLAAQVMWLVVKITAPVLLLGLAMGLVVSIFQATTQLQEQTLAFIPKIIAVVI 60

Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYI 88
          ALL FGPW++  L+DFT  ILG+L  Y+
Sbjct: 61 ALLAFGPWMLQNLIDFTNSILGNLMQYV 88


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.142    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 377,388,325
Number of extensions: 9253490
Number of successful extensions: 32403
Number of sequences better than 1.0e-05: 669
Number of HSP's gapped: 32430
Number of HSP's successfully gapped: 669
Length of query: 89
Length of database: 3,060,696,203
Length adjustment: 59
Effective length of query: 30
Effective length of database: 2,504,856,318
Effective search space: 75145689540
Effective search space used: 75145689540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)