BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0041.p (142 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIE1.1 B3KIE1_9BACI Flagellar biosynthesis protein FlhA 246 5e-64 B1DLM9.1 B1DLM9_9BACL Flagellar biosynthesis protein FlhA 239 5e-62 C0ZF81.1 C0ZF81_BREBN Flagellar biosynthesis protein FlhA 197 3e-49 Q9KA52.1 Q9KA52_BACHD Flagella-associated protein 171 2e-41 A8VS25.1 A8VS25_9BACI Flagellar protein export ATPase FliI EC=3.... 169 6e-41 >B3KIE1.1 B3KIE1_9BACI Flagellar biosynthesis protein FlhA Length = 677 Score = 246 bits (628), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 134/142 (94%) Query: 1 VTIFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESV 60 VTI ETLADYG Y+KDPDVLTEYVRQ+LSRQITQQ++Q GE +RVITVGP LEKKI+ESV Sbjct: 536 VTILETLADYGHYSKDPDVLTEYVRQALSRQITQQYAQEGEAMRVITVGPQLEKKIAESV 595 Query: 61 QQTEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDI 120 QQ++QGSYLA+DP STQ+V+Q+L+EQ+NR++Q GQQP++LTSP IRMYLRQVIER+MQDI Sbjct: 596 QQSDQGSYLAMDPASTQSVFQKLSEQVNRIIQMGQQPVLLTSPAIRMYLRQVIERSMQDI 655 Query: 121 PVLSYSELEPNIEIQSVGVVNL 142 PVLSYSELEPN+EIQSVGVVNL Sbjct: 656 PVLSYSELEPNVEIQSVGVVNL 677 >B1DLM9.1 B1DLM9_9BACL Flagellar biosynthesis protein FlhA Length = 677 Score = 239 bits (610), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 112/142 (78%), Positives = 130/142 (91%) Query: 1 VTIFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESV 60 VTIFE+LAD YTKDPD+LTEY RQ+LSRQITQQF+ TG LRVITVGP LEKKI+ESV Sbjct: 536 VTIFESLADQAHYTKDPDILTEYARQALSRQITQQFTSTGNMLRVITVGPALEKKIAESV 595 Query: 61 QQTEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDI 120 QQT+QGSY+ALDPV+TQ +YQ+L EQ++R +QSGQ P+VLTSPTIRMYLRQ++ERTMQD+ Sbjct: 596 QQTDQGSYIALDPVATQQIYQKLNEQVSRQIQSGQHPVVLTSPTIRMYLRQIVERTMQDV 655 Query: 121 PVLSYSELEPNIEIQSVGVVNL 142 PVLSYSELEPNIE+QSVGVVNL Sbjct: 656 PVLSYSELEPNIEVQSVGVVNL 677 >C0ZF81.1 C0ZF81_BREBN Flagellar biosynthesis protein FlhA Length = 680 Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 85/140 (60%), Positives = 120/140 (85%) Query: 3 IFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESVQQ 62 I E LAD+ YTKDPDVLTEYVRQ+++RQIT QF++ G+ LRV+T G LEK ISE V+Q Sbjct: 540 ILEALADHALYTKDPDVLTEYVRQAMARQITLQFTEPGQPLRVLTAGAGLEKAISERVEQ 599 Query: 63 TEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDIPV 122 +EQGSYLA+DP ++Q ++Q ++ ++++++ SGQQPI+L+SP +RMYLRQ+++R M D+PV Sbjct: 600 SEQGSYLAMDPETSQRIFQIMSTEVSKMINSGQQPIILSSPAVRMYLRQLVDRMMPDVPV 659 Query: 123 LSYSELEPNIEIQSVGVVNL 142 LSYSELEP++E+QSVG+VN+ Sbjct: 660 LSYSELEPHVEVQSVGMVNI 679 >Q9KA52.1 Q9KA52_BACHD Flagella-associated protein Length = 677 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 78/140 (55%), Positives = 111/140 (79%) Query: 2 TIFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESVQ 61 TIFET+ADYG TKD D+LTEYVRQSLSRQI++QF+Q GE L V+T+ +EK I++ VQ Sbjct: 536 TIFETIADYGQMTKDMDLLTEYVRQSLSRQISKQFAQQGEPLYVVTLSGMVEKMIADGVQ 595 Query: 62 QTEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDIP 121 QTE G+++++DP +Q + + ++ +RL Q GQ P++L SP +RMY+RQ++ER + +P Sbjct: 596 QTEHGNFVSIDPDQSQKIIEAAAQEADRLSQMGQPPVILCSPAVRMYVRQLLERYLPQVP 655 Query: 122 VLSYSELEPNIEIQSVGVVN 141 +LSY+ELE N+E+QSVGVVN Sbjct: 656 ILSYNELEANVEVQSVGVVN 675 >A8VS25.1 A8VS25_9BACI Flagellar protein export ATPase FliI EC=3.6.3.15 Length = 682 Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 78/139 (56%), Positives = 109/139 (78%) Query: 3 IFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESVQQ 62 IFETLADY T+D D++TEYVRQSLSRQIT+Q++ GE L VIT+G ++EK +++SVQQ Sbjct: 542 IFETLADYAQMTRDTDLMTEYVRQSLSRQITKQYATEGEPLYVITMGGDVEKTLADSVQQ 601 Query: 63 TEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDIPV 122 TEQG++L LDP +Q + + ++ RL ++G P++L SP +RMY+ +IER M +PV Sbjct: 602 TEQGAFLNLDPQMSQKIVENTMMEVQRLQETGHMPLILCSPAVRMYVHHLIERYMPQVPV 661 Query: 123 LSYSELEPNIEIQSVGVVN 141 LSY+ELEP++E+QSVGVVN Sbjct: 662 LSYNELEPHVEVQSVGVVN 680 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 709,944,987 Number of extensions: 23622537 Number of successful extensions: 77293 Number of sequences better than 1.0e-05: 1165 Number of HSP's gapped: 76679 Number of HSP's successfully gapped: 1165 Length of query: 142 Length of database: 3,060,696,203 Length adjustment: 105 Effective length of query: 37 Effective length of database: 2,071,489,628 Effective search space: 76645116236 Effective search space used: 76645116236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)