BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0039.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIE3.1 B3KIE3_9BACI Cobyrinic acid ac-diamide synthase 358 4e-97 B1DLN1.1 B1DLN1_9BACL Cobyrinic acid ac-diamide synthase 296 2e-78 C0ZF79.1 C0ZF79_BREBN Putative uncharacterized protein ylxH 255 2e-66 A3DCP6.1 A3DCP6_CLOTH Cobyrinic acid a,c-diamide synthase 232 3e-59 B4BH06.1 B4BH06_CLOTM Cobyrinic acid ac-diamide synthase 232 3e-59 >B3KIE3.1 B3KIE3_9BACI Cobyrinic acid ac-diamide synthase Length = 296 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 174/283 (61%), Positives = 216/283 (76%), Gaps = 3/283 (1%) Query: 1 VSSQGPKRASGGEA--SARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMA 58 VS+Q P ++ + +A+IITV SGKGGVGKSNFTLNFALTLQ+MGKRVL+FDADIGMA Sbjct: 12 VSAQQPGESAKATSARTAKIITVSSGKGGVGKSNFTLNFALTLQSMGKRVLVFDADIGMA 71 Query: 59 NIDVLMGVSAKYNLYHLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTD 118 NIDVLMGVS++Y+LYHL++RE I E+I GP LP+IAGGSG+ ++ SLSE ++ YF Sbjct: 72 NIDVLMGVSSRYSLYHLIRREKSIEEVIQYGPDKLPYIAGGSGLADMMSLSEEEMDYFIS 131 Query: 119 QITGIADTMDFILFDTGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHP 178 QI IA MD+I+FDTGAGLSKE MKFITSAD CLVVTTPEPT+ITDAYALIKVV+ + Sbjct: 132 QIERIASGMDYIIFDTGAGLSKENMKFITSADQCLVVTTPEPTSITDAYALIKVVHGTES 191 Query: 179 KVSFRLIVNQAGDEKEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSV 238 KV F LIVN+AGDE+EA + KI + A RFL +DI LG I+ DTHVVQ+VKRQ+PF+ Sbjct: 192 KVPFSLIVNRAGDEEEAREAAGKIILTAQRFLDIDIKLLGSIADDTHVVQSVKRQVPFTA 251 Query: 239 AFPNSSAAKDVHRXXXXXXXXXXXXTTKV-QGIKGFISKWLKR 280 A+P +A+ D+ R + +GIKGF+ +WLKR Sbjct: 252 AYPRCNASSDIRRIALRYMAVPAAPEPETPKGIKGFMHRWLKR 294 >B1DLN1.1 B1DLN1_9BACL Cobyrinic acid ac-diamide synthase Length = 290 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/263 (55%), Positives = 188/263 (71%) Query: 17 RIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYNLYHLL 76 RI+T+ SGKGGVGKSNF+LNFA++LQ +GK+VL+FDADIGMANIDVLMGVS+ Y+LYHL Sbjct: 25 RIVTITSGKGGVGKSNFSLNFAISLQRLGKKVLVFDADIGMANIDVLMGVSSSYHLYHLF 84 Query: 77 KREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILFDTGA 136 K++ I +II GP G+ FIAGGSG +L L+ L +F+DQI + DFILFDTGA Sbjct: 85 KQDKTIWDIIQIGPSGVHFIAGGSGFQDLLDLTAEQLDWFSDQIGKLQGEYDFILFDTGA 144 Query: 137 GLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLIVNQAGDEKEAH 196 GLSKET+KFI++A++ VVTTPEPTAITDAYAL+K+V + SF+LI+N+A D +E Sbjct: 145 GLSKETVKFISAAEETFVVTTPEPTAITDAYALVKMVKSMGINASFKLIINRATDRREGI 204 Query: 197 ATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAAKDVHRXXXXX 256 T+DKI + A RFL ++ LG I D +V +AVKRQ PF+VAFP S A+K + Sbjct: 205 QTADKINLVARRFLHAELPTLGVILDDPNVTKAVKRQTPFTVAFPGSDASKGIDEIARRY 264 Query: 257 XXXXXXXTTKVQGIKGFISKWLK 279 T G++GFI K + Sbjct: 265 LEMSIPEQTAAAGVRGFIHKMFR 287 >C0ZF79.1 C0ZF79_BREBN Putative uncharacterized protein ylxH Length = 287 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/263 (47%), Positives = 178/263 (67%), Gaps = 6/263 (2%) Query: 17 RIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYNLYHLL 76 R++TV SGKGGVGKSNF+LNF L L G + +LFD D+G+AN+DVLMG++ K +L+HLL Sbjct: 22 RLVTVTSGKGGVGKSNFSLNFGLGLIEKGHKAVLFDLDLGLANLDVLMGITPKKHLFHLL 81 Query: 77 KREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYF---TDQITGIADTMDFILFD 133 + + + +II GP GL FIAGGSG ++ L + L D + G ADT I+FD Sbjct: 82 EPDTTVWDIIEHGPGGLEFIAGGSGFTQIMQLDDEKLDRLFSHLDPLQGYADT---IIFD 138 Query: 134 TGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLIVNQAGDEK 193 TGAG SKE+M+F+ S+D+ ++VTTPEP AITDAYA+IK++++ +P VS RL++N+A E+ Sbjct: 139 TGAGFSKESMRFMLSSDEVILVTTPEPPAITDAYAVIKMLHSRNPAVSIRLVINRASSER 198 Query: 194 EAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAAKDVHRXX 253 E T+DK+ M + RFL +DI LGY+S D +V +AVK Q PF + +P S AA+ + Sbjct: 199 EGKMTADKLAMVSKRFLNMDIQSLGYVSDDPYVSKAVKLQRPFLLTYPQSQAARSIRNLV 258 Query: 254 XXXXXXXXXXTTKVQGIKGFISK 276 + G+KGF+++ Sbjct: 259 ERYLDRPVTTDDSISGLKGFLAR 281 >A3DCP6.1 A3DCP6_CLOTH Cobyrinic acid a,c-diamide synthase Length = 302 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 168/267 (62%), Gaps = 1/267 (0%) Query: 13 EASARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYNL 72 E +A++ITV SGKGGVGK+N T+N A+ L +GKRV + DAD G+ANID+L+G+ KY L Sbjct: 31 EKTAKVITVTSGKGGVGKTNITINLAIALSELGKRVTILDADFGLANIDILLGIVPKYTL 90 Query: 73 YHLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILF 132 +L + +I E++ GPK + F++GGSG++EL L L F I+ + D IL Sbjct: 91 VDVLYDKKNILEVLTDGPKNIKFMSGGSGVEELVKLDSTQLEKFVSNISLLDKLSDVILI 150 Query: 133 DTGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLIVNQAGDE 192 DTGAGLS+ M F+ +AD+ +VTTPEPT+ITDAYALIK+++N R++VN+A + Sbjct: 151 DTGAGLSESVMSFVMAADEVFLVTTPEPTSITDAYALIKMISNRENNKIIRVVVNRAENA 210 Query: 193 KEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAAKDVHRX 252 EA +++ M +FL + + LG+I D V++AVK Q PFS++FP A K + Sbjct: 211 NEAKDILNRLSMVTEKFLAMKLYPLGFIPQDESVIKAVKMQQPFSLSFPKCDATKHIKEI 270 Query: 253 XXXXXXXXXXXTTKVQ-GIKGFISKWL 278 + + + GIKGF+ + + Sbjct: 271 SKRLIEGSTGLSNRQEGGIKGFVRRLV 297 >B4BH06.1 B4BH06_CLOTM Cobyrinic acid ac-diamide synthase Length = 302 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 168/267 (62%), Gaps = 1/267 (0%) Query: 13 EASARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYNL 72 E +A++ITV SGKGGVGK+N T+N A+ L +GKRV + DAD G+ANID+L+G+ KY L Sbjct: 31 EKTAKVITVTSGKGGVGKTNITINLAIALSELGKRVTILDADFGLANIDILLGIVPKYTL 90 Query: 73 YHLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILF 132 +L + +I E++ GPK + F++GGSG++EL L L F I+ + D IL Sbjct: 91 VDVLYDKKNILEVLTDGPKNIKFMSGGSGVEELVKLDSTQLEKFVSNISLLDKLSDVILI 150 Query: 133 DTGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLIVNQAGDE 192 DTGAGLS+ M F+ +AD+ +VTTPEPT+ITDAYALIK+++N R++VN+A + Sbjct: 151 DTGAGLSESVMSFVMAADEVFLVTTPEPTSITDAYALIKMISNRENNKIIRVVVNRAENA 210 Query: 193 KEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAAKDVHRX 252 EA +++ M +FL + + LG+I D V++AVK Q PFS++FP A K + Sbjct: 211 NEAKDILNRLSMVTEKFLAMKLYPLGFIPQDESVIKAVKMQQPFSLSFPKCDATKHIKEI 270 Query: 253 XXXXXXXXXXXTTKVQ-GIKGFISKWL 278 + + + GIKGF+ + + Sbjct: 271 SKRLIEGSTGLSNRQEGGIKGFVRRLV 297 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,515,404,941 Number of extensions: 58222225 Number of successful extensions: 158812 Number of sequences better than 1.0e-05: 1848 Number of HSP's gapped: 157993 Number of HSP's successfully gapped: 1848 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)