BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0037.p (687 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIE5.1 B3KIE5_9BACI P2 response regulator binding domain protein 991 0.0 B1DLN3.1 B1DLN3_9BACL CheA signal transduction histidine kinase 808 0.0 C0ZF77.1 C0ZF77_BREBN Chemotaxis protein CheA EC=2.7.3.- 734 0.0 A8VS32.1 A8VS32_9BACI Putative CheA signal transduction histidin... 718 0.0 B1HQY1.1 B1HQY1_LYSSC Chemotaxis protein EC=2.7.13.3 714 0.0 >B3KIE5.1 B3KIE5_9BACI P2 response regulator binding domain protein Length = 689 Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/689 (70%), Positives = 567/689 (82%), Gaps = 2/689 (0%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 MDMNQYL+MFIDESNDHLQSLNE+M+ LE+NP+D+ IVQ+IFRSAHTLKGMAATMGFEDL Sbjct: 1 MDMNQYLTMFIDESNDHLQSLNENMLQLESNPDDIGIVQIIFRSAHTLKGMAATMGFEDL 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 ASLTHQMENVLDLVRN KL+MQDFIFDTLFKSLDALESMV+DIT GG+GKADVSAIVASL Sbjct: 61 ASLTHQMENVLDLVRNEKLKMQDFIFDTLFKSLDALESMVQDITEGGDGKADVSAIVASL 120 Query: 121 QAIVRGEIXXXXXXXXXXXXXXXXXXXVFLDEFQYSVLEQSLQEGHKVLYVDVAIRKDCQ 180 Q+IVRGE + LDEFQ+SVL+QS+ EGHKVLY+ V +R+DCQ Sbjct: 121 QSIVRGEGASANGGSVEGNNAAVAVQGIELDEFQFSVLDQSISEGHKVLYIQVTLREDCQ 180 Query: 181 LKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAMILNLSE 240 LKAVRAYMVF+ LERSGE+VK++P VQ+IEQ +FD FSLYYITQ+E +I++ IL +SE Sbjct: 181 LKAVRAYMVFETLERSGEIVKTYPDVQEIEQGEFDRVFSLYYITQRETQDIESQILGVSE 240 Query: 241 IDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAPVR 300 I+ T VALD ESL+QM Q+ AP R Sbjct: 241 IEAATVVALDHESLQQMVQESAATAEAVKPEAPSAVPAAGVSPEAKSAPAPAKESKAPAR 300 Query: 301 T--GGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGRVSGD 358 GG PSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASE +N +LT+TVEHM RVS D Sbjct: 301 NAGGGNPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASESRNQELTDTVEHMSRVSSD 360 Query: 359 LQNIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGDPLVH 418 LQNIV+KLRMVPVDTVFNRFPRMVRDLAK+LDKKIDL++TGA+TELDRTVIDEIGDPLVH Sbjct: 361 LQNIVLKLRMVPVDTVFNRFPRMVRDLAKTLDKKIDLIITGADTELDRTVIDEIGDPLVH 420 Query: 419 LLRNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQSAIK 478 LLRN+ DHGVE + DR+AAGK +TGTV+LRAFHSGN+VFIEIEDDG GI KIL++A+ Sbjct: 421 LLRNSADHGVEPVADRIAAGKPETGTVHLRAFHSGNNVFIEIEDDGRGIYRDKILKNALA 480 Query: 479 KGILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNVVVYS 538 KG++++ +A+S +DDE QLLFAPGFSTAE ISDVSGRGVGLDVVKSKI +LGGNV +YS Sbjct: 481 KGVVTETEAASMTDDEVNQLLFAPGFSTAEKISDVSGRGVGLDVVKSKIVALGGNVTIYS 540 Query: 539 TQGKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNKMVEF 598 T GKGTNFSVQLPLTLSIIAAML+R+G+EKYAIPLSSIVETGI+K+ QI+ +HG++M++F Sbjct: 541 TPGKGTNFSVQLPLTLSIIAAMLIRMGSEKYAIPLSSIVETGIIKRGQIKHVHGSRMIQF 600 Query: 599 RNSHIPLVSLSKIFSVPDYDXXXXXXXXIVVVRKGERLVALAVQDFIGQNEIVIKNLGKY 658 R S IP++SLS++F VPD+D IVV+RKG+RL AL + DFIGQ+EIVIKNLGKY Sbjct: 601 RESMIPVISLSRLFEVPDFDEEREEETEIVVIRKGDRLAALTIDDFIGQSEIVIKNLGKY 660 Query: 659 LPEVQGISGATILGDGQVALIIDPNAFIK 687 LP +QG+SGATILGDGQVALIID NAFIK Sbjct: 661 LPAIQGVSGATILGDGQVALIIDANAFIK 689 >B1DLN3.1 B1DLN3_9BACL CheA signal transduction histidine kinase Length = 653 Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/620 (64%), Positives = 487/620 (78%), Gaps = 2/620 (0%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 MDMN YLSMFIDESNDHLQ+LNE+++ LE+ PEDL+IVQ IFRSAHTLKGM+ATMG+EDL Sbjct: 1 MDMNAYLSMFIDESNDHLQALNENLLRLESEPEDLTIVQSIFRSAHTLKGMSATMGYEDL 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 ASLTH+MENVLDLVRN+KL+M +FIFDTLFK LDALESMV+DI GGG GKADV+AIVASL Sbjct: 61 ASLTHEMENVLDLVRNSKLKMDEFIFDTLFKGLDALESMVQDIVGGGTGKADVTAIVASL 120 Query: 121 QAIVRGEIXXXXXXXXXXXXXXXXXXXV--FLDEFQYSVLEQSLQEGHKVLYVDVAIRKD 178 Q+IV+G+ LDEFQ SV++QS+ GH V Y++V IR+D Sbjct: 121 QSIVKGDYKTAGASTAASSAPSGSVQQTGGILDEFQTSVIQQSIDSGHNVYYIEVEIRED 180 Query: 179 CQLKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAMILNL 238 C LK VRAYMVFDLL ++G++VKS PSV D+EQEKFD SFS++ I+ E++A I + Sbjct: 181 CVLKGVRAYMVFDLLGKNGDIVKSEPSVTDLEQEKFDRSFSVFAISTLSQQELEAQIAAI 240 Query: 239 SEIDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAP 298 SEI+KV+ LD ESL + + A Sbjct: 241 SEIEKVSVALLDLESLAMLNNAAAKEQAPAAAPAPAATQSEAAKEEAGKQVSAARTQAAA 300 Query: 299 VRTGGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGRVSGD 358 A SRTIRVDI+RLD LMNLFSELLIDRVRLEQL+SE++ DLTETVEHM RVS D Sbjct: 301 STAPAAVSRTIRVDIDRLDALMNLFSELLIDRVRLEQLSSEIRRNDLTETVEHMTRVSSD 360 Query: 359 LQNIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGDPLVH 418 LQNIV+KLRMVPVD+VFNRFPRM+RDLAKSLDKKIDLV+TGA+TELDRTVIDEIGDPLVH Sbjct: 361 LQNIVLKLRMVPVDSVFNRFPRMIRDLAKSLDKKIDLVITGADTELDRTVIDEIGDPLVH 420 Query: 419 LLRNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQSAIK 478 LLRN+VDHG+E Q+R++AGKS+TGT+NLRA+HSGNHVFIE+E+DG GIN +K+LQ+AIK Sbjct: 421 LLRNSVDHGIETTQERISAGKSETGTINLRAYHSGNHVFIEVEEDGRGINREKVLQTAIK 480 Query: 479 KGILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNVVVYS 538 G+++++QA SD++ L+FAPGFSTA+ ISD+SGRGVGLDVV+SKITSLGGNV V S Sbjct: 481 NGVVTEDQAKQLSDEDINMLIFAPGFSTADKISDISGRGVGLDVVRSKITSLGGNVTVDS 540 Query: 539 TQGKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNKMVEF 598 G+GT F+VQLPLTLSII+AML++LG+EKYAIPL+SIVETGIV++ QI ++HGN+M+ F Sbjct: 541 ALGRGTKFAVQLPLTLSIISAMLIKLGSEKYAIPLTSIVETGIVQKEQILNVHGNRMIHF 600 Query: 599 RNSHIPLVSLSKIFSVPDYD 618 RN+ IPLVSLSK+ PD++ Sbjct: 601 RNAVIPLVSLSKVLDSPDFN 620 >C0ZF77.1 C0ZF77_BREBN Chemotaxis protein CheA EC=2.7.3.- Length = 674 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/693 (54%), Positives = 484/693 (69%), Gaps = 25/693 (3%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 MDMNQYL MFI+ES +HLQ++N +++ LE++P ++ V+ IFRSAHTLKGM+ATMG+ED+ Sbjct: 1 MDMNQYLDMFIEESKEHLQAINANLLLLESDPGNIGHVKEIFRSAHTLKGMSATMGYEDM 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 ASLTH+ ENVLDL+RN KL + I D +F+S+D +E MV DIT GG+G ADV+AIV L Sbjct: 61 ASLTHEAENVLDLIRNQKLTITSDIMDAIFQSVDLIEGMVIDITEGGDGSADVTAIVKKL 120 Query: 121 QAIVRG------EIXXXXXXXXXXXXXXXXXXXVFLDEFQYSVLEQSLQEGHKVLYVDVA 174 +AIV G E+ LD++ VL+QS + G+ VL++ V Sbjct: 121 RAIVAGDFSAEQEVAAATMAVEAPQEESTPAEDHELDDYAMMVLKQSQELGNNVLWIKVT 180 Query: 175 IRKDCQLKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAM 234 + ++C LKA R+YMVFD LE GEV+K+ P+V+DIE E+F+ SF + Y+T++ +++ Sbjct: 181 LNENCLLKAARSYMVFDQLESMGEVIKTKPAVEDIENERFEQSFEIAYVTEQSIEKVRTT 240 Query: 235 ILNLSEIDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 294 ILN+SEI VT + +S Sbjct: 241 ILNISEIQDVTIETIQMKS-------------------EAPPAPVVQQTPAPAEKGAADA 281 Query: 295 KPAPVRTGGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGR 354 APV+ A +TIRVDIERLD+LMNLFSEL+IDR RLEQLA E+ +L ETVEHM R Sbjct: 282 PQAPVKKATAGGKTIRVDIERLDILMNLFSELVIDRGRLEQLAREIGKNELQETVEHMSR 341 Query: 355 VSGDLQNIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGD 414 +SGDLQNI++ +RMVPV+ VFNRFPRM+RDL K L+KK++L + GAETELDRTVIDEIGD Sbjct: 342 ISGDLQNIILTMRMVPVEQVFNRFPRMIRDLQKDLNKKVNLEIIGAETELDRTVIDEIGD 401 Query: 415 PLVHLLRNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQ 474 PL HLLRN++DHG+E DR AGK + G + LRAFHSGNHVFIE++DDGAGIN K+L+ Sbjct: 402 PLNHLLRNSLDHGIESPADRKKAGKPEEGKIELRAFHSGNHVFIEVKDDGAGINKDKVLK 461 Query: 475 SAIKKGILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNV 534 A+++GI++ A S SD + +LLFA GFSTAEV+SD+SGRGVGLDVVKSKI SLGG+V Sbjct: 462 KALERGIVNPAIADSMSDKQIHELLFAAGFSTAEVVSDISGRGVGLDVVKSKIESLGGSV 521 Query: 535 VVYSTQGKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNK 594 V S +G+GT F +QLPLTLSII+AMLV++ EKYA+PLSSI+ET + K+ QI H K Sbjct: 522 GVDSVRGQGTTFLIQLPLTLSIISAMLVQVKDEKYAVPLSSIIETAVFKKDQIMMAHRQK 581 Query: 595 MVEFRNSHIPLVSLSKIFSVPDYDXXXXXXXXIVVVRKGERLVALAVQDFIGQNEIVIKN 654 +++FR +PLVSL IF VPD +V+VRKGE++ L V FIGQ EIV+K+ Sbjct: 582 VIDFRGRVVPLVSLQDIFQVPDNGETTEDEVAVVIVRKGEKMAGLVVDSFIGQQEIVLKS 641 Query: 655 LGKYLPEVQGISGATILGDGQVALIIDPNAFIK 687 LGKYL V ISGATILGDGQVALIID N+ IK Sbjct: 642 LGKYLVNVFAISGATILGDGQVALIIDCNSLIK 674 >A8VS32.1 A8VS32_9BACI Putative CheA signal transduction histidine kinase Length = 683 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/695 (52%), Positives = 486/695 (69%), Gaps = 20/695 (2%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 M+ NQYL MFIDES +HLQ+LN++++ LE NPEDL IV IFRSAHTLKGMAATMGFEDL Sbjct: 1 MERNQYLDMFIDESTEHLQALNKNLLDLEKNPEDLQIVNEIFRSAHTLKGMAATMGFEDL 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 ASLTHQMENVLD +RN K+ + D +F+S+D LE MV DI GGEGK DV+ +VA L Sbjct: 61 ASLTHQMENVLDGIRNEKIGATTQLMDVVFESVDDLEFMVNDIADGGEGKKDVTEVVAKL 120 Query: 121 QAIVRGEIXXXXXXXXXXXXXXXX--XXXVFLDEFQYSVLEQSLQEGHKVLYVDVAIRKD 178 + + +GE V D+F+++V+ QS ++G L + +++R+D Sbjct: 121 EMLEKGENSETVQAGSGVETKSQNGDRTDVEYDDFEHTVIRQSYEQGFNPLQISISLRED 180 Query: 179 CQLKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAMILNL 238 LKA R +MVF++LE+ GEV+KS P+V +E+E+FD SF + +T+ +A E+++ I+ + Sbjct: 181 VILKAARVFMVFEVLEQVGEVIKSVPAVDKLEEEEFDLSFDVTLVTKTDAEEVKSRIMKV 240 Query: 239 SEIDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAP 298 SEID V +D ++ + + G Sbjct: 241 SEIDDVIIETIDVDAFEEQPDE-----KTAASNDPGETPKPQSSEKSSGAKEPENGNDKE 295 Query: 299 VRTGGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGRVSGD 358 +T ++TIRV+I+RLD LMNLF EL+IDR RLEQ++ ++++ +LTETVEHM R+SGD Sbjct: 296 EKTTQPSNKTIRVNIDRLDSLMNLFEELVIDRGRLEQISRDMKSAELTETVEHMSRISGD 355 Query: 359 LQNIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGDPLVH 418 LQNI++ +RMVPV+ VFNRFPRMVR LAK L+KKI+L + GAETELDRTVIDEIGDPLVH Sbjct: 356 LQNIILNMRMVPVEQVFNRFPRMVRGLAKDLNKKINLEIIGAETELDRTVIDEIGDPLVH 415 Query: 419 LLRNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQSAIK 478 LLRN++DHGVE +R AGKSD G + L+A+HSGNHVFIE+ DDG+GIN ++L+ AIK Sbjct: 416 LLRNSIDHGVEMPAERKQAGKSDEGNITLKAYHSGNHVFIEVSDDGSGINRDRVLRKAIK 475 Query: 479 KGILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNVVVYS 538 GI+++E + + +D + +LLF+ G STA+VISDVSGRGVGLDVVK+KI SLGGNV V S Sbjct: 476 SGIVTEENSHNMTDRQVYELLFSSGLSTADVISDVSGRGVGLDVVKNKIESLGGNVTVTS 535 Query: 539 TQGKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNKMVEF 598 G+GT FS+QLPLTLSII+ MLV + E YA+PLSSI+ET I+K+ +I S H K+++F Sbjct: 536 KPGEGTTFSIQLPLTLSIISVMLVEVQEEIYAVPLSSIIETAIIKKDEIMSAHNQKVIDF 595 Query: 599 RNSHIPLVSLSKIFSVP------DYDXXXXXXXXIVVVRKGERLVALAVQDFIGQNEIVI 652 R S +PL+ L++ F VP DY IV+VRKGE++ AL V FIGQ EIV+ Sbjct: 596 RGSVVPLIDLTQFFDVPVSKEDDDY-------YSIVIVRKGEKMAALVVNSFIGQQEIVL 648 Query: 653 KNLGKYLPEVQGISGATILGDGQVALIIDPNAFIK 687 K+LG YL V ISGATILG+GQVALIID NA IK Sbjct: 649 KSLGNYLTSVFAISGATILGNGQVALIIDCNALIK 683 >B1HQY1.1 B1HQY1_LYSSC Chemotaxis protein EC=2.7.13.3 Length = 690 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/691 (52%), Positives = 479/691 (69%), Gaps = 5/691 (0%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 M++NQYL MFI+ES +HLQ+ +E ++ LE NP+DL+IV IFRSAHTLKGM+ATMGFEDL Sbjct: 1 MEVNQYLEMFIEESKEHLQACSEHLLALEKNPDDLAIVGEIFRSAHTLKGMSATMGFEDL 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 A LTH+MENVLD +RN K+ + I D +F+S+D LE MV DI GG+GK DVSA VA L Sbjct: 61 ADLTHKMENVLDAIRNEKIHVTPEILDVVFESVDHLEEMVMDIANGGDGKRDVSATVAQL 120 Query: 121 QAIVRGEIXXXXXXXXXXXXXXXXXXXVFLDEFQYSVLEQSLQEGHKVLYVDVAIRKDCQ 180 + I GE + D F+ +V+ QS ++G + V +R+DC Sbjct: 121 KRIELGEEAVPEVVATVAEPAAVECVLEY-DSFEQTVITQSAEQGFHAYEISVKLREDCL 179 Query: 181 LKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAMILNLSE 240 LKA R +MVF++LE+ GEV+KS PSV+ +E E+FD F + ++T++ A ++Q I+ +SE Sbjct: 180 LKAARVFMVFEILEKDGEVIKSSPSVEKLEDEQFDQQFYVAFVTKESAEDMQKKIMKVSE 239 Query: 241 IDKVTAVALDQE--SLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAP 298 +++V A+DQ+ S R+ PA Sbjct: 240 VEEVIVTAIDQKKFSEREYESQQEVAATALAVAEVESTSTPDPSKPEPVAQSVKTAAPAK 299 Query: 299 VRTGGAP--SRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGRVS 356 AP ++TIRV+IERLD+LMNLF EL+IDR RL+ +A+EV + +L ETVE M RV Sbjct: 300 AEKNHAPVGNKTIRVNIERLDILMNLFEELVIDRGRLQSIATEVNHGELNETVERMSRVM 359 Query: 357 GDLQNIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGDPL 416 GDLQ I++ +RMVPV+TVFNRFP+M+R L++ L+KKI+L + GAETELDRTVIDEIGDPL Sbjct: 360 GDLQTIILTMRMVPVETVFNRFPKMIRQLSRDLNKKINLEIIGAETELDRTVIDEIGDPL 419 Query: 417 VHLLRNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQSA 476 VHL+RN+VDHG+E R A GK + GTV LRA+HSGN+VFIEIEDDGAGIN K+L A Sbjct: 420 VHLIRNSVDHGIENPTSRRAKGKPEEGTVVLRAYHSGNYVFIEIEDDGAGINRDKVLAKA 479 Query: 477 IKKGILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNVVV 536 I KGI++QEQ+ S SD++ +L+ A GFSTA+VISDVSGRGVGLDVVK+ I SLGGN+ + Sbjct: 480 ISKGIVTQEQSYSMSDNQINELILASGFSTADVISDVSGRGVGLDVVKTTIESLGGNISI 539 Query: 537 YSTQGKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNKMV 596 STQ G+ FS+QLPLTLSII+ MLV + E YAIPLSSI+ET I++ ++I + H K++ Sbjct: 540 ESTQDVGSIFSIQLPLTLSIISVMLVEIEKEIYAIPLSSIIETSIIRSSEIMNAHNQKVI 599 Query: 597 EFRNSHIPLVSLSKIFSVPDYDXXXXXXXXIVVVRKGERLVALAVQDFIGQNEIVIKNLG 656 +FR +PLV L +IF VP + +V+VRKGE+L L V FIGQ EIV+K+LG Sbjct: 600 DFRGKVVPLVFLEEIFEVPRTEPQDEEFHSVVIVRKGEKLAGLVVDSFIGQQEIVLKSLG 659 Query: 657 KYLPEVQGISGATILGDGQVALIIDPNAFIK 687 YL + ISGATILG+G+VALI+D NA IK Sbjct: 660 NYLTNIFAISGATILGNGKVALIVDCNALIK 690 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,314,148,302 Number of extensions: 124805102 Number of successful extensions: 422734 Number of sequences better than 1.0e-05: 1655 Number of HSP's gapped: 419892 Number of HSP's successfully gapped: 2749 Length of query: 687 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 544 Effective length of database: 1,713,491,058 Effective search space: 932139135552 Effective search space used: 932139135552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)