BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0035.p (208 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIE7.1 B3KIE7_9BACI CheC domain protein 318 2e-85 C0ZF75.1 C0ZF75_BREBN Chemotaxis protein CheC 260 5e-68 Q5L0K7.1 Q5L0K7_GEOKA Chemotactic methyltransferase inhibitor 228 2e-58 B7GG95.1 B7GG95_ANOFW Chemotaxis protein phosphatase CheC 227 6e-58 C3J424.1 C3J424_9BACI CheC, inhibitor of MCP methylation 226 1e-57 >B3KIE7.1 B3KIE7_9BACI CheC domain protein Length = 208 Score = 318 bits (816), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 161/208 (77%), Positives = 184/208 (88%) Query: 1 VELFKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGA 60 +ELFK+ K+ KMDVLKEVGNIGAGNAATALS+LL KPIDMAVPKVQLL FE+I + VGG+ Sbjct: 1 MELFKHGKEIKMDVLKEVGNIGAGNAATALSRLLNKPIDMAVPKVQLLPFEQIAESVGGS 60 Query: 61 EELVYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGEMELSALNEIGNI 120 E+LV AVFLRVEG APGNLFFI++PEA NLL +AGIE++ EME SAL EIGNI Sbjct: 61 EQLVLAVFLRVEGSAPGNLFFIMSPEAGKNLLLNLAGIEVSEEEPFSEMEQSALCEIGNI 120 Query: 121 LAGSYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHNE 180 L+GSYLSSLADFT+LSM PTVPALAMDMAGAILSYGLLQFG+MGDDALLI+TTFLEG NE Sbjct: 121 LSGSYLSSLADFTNLSMTPTVPALAMDMAGAILSYGLLQFGEMGDDALLINTTFLEGQNE 180 Query: 181 IEGQFFLIPDPESFPKIFKALGVPFDND 208 +EGQFFLIPDP+SF +IF+ALGVP ++D Sbjct: 181 VEGQFFLIPDPQSFAQIFEALGVPLEHD 208 >C0ZF75.1 C0ZF75_BREBN Chemotaxis protein CheC Length = 208 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 130/205 (63%), Positives = 165/205 (80%), Gaps = 1/205 (0%) Query: 4 FKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEEL 63 F F DF+ DVL+E+GNIGAG+AATALS+L+ K IDM VP+V++++F+E+ D VGGAE + Sbjct: 4 FTKFGDFQFDVLREIGNIGAGHAATALSKLIQKEIDMKVPQVKIISFDEVADFVGGAETV 63 Query: 64 VYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGEMELSALNEIGNILAG 123 V VFLRVEG+ PGN+FFIL E+A +LL +I GI E E+E+SAL+EIGNIL G Sbjct: 64 VVTVFLRVEGDCPGNMFFILDLESAKHLLEQITGIN-KDVYEWEELEISALHEIGNILTG 122 Query: 124 SYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHNEIEG 183 SYLSSLADFT L++ P+VPALA+DMAGAILSYGL+ GQ GD AL IDT F EG+++++G Sbjct: 123 SYLSSLADFTRLNLQPSVPALAVDMAGAILSYGLIALGQAGDFALTIDTAFFEGNDQVKG 182 Query: 184 QFFLIPDPESFPKIFKALGVPFDND 208 FFLIPDPES P +F++LGVPFD D Sbjct: 183 NFFLIPDPESLPILFRSLGVPFDGD 207 >Q5L0K7.1 Q5L0K7_GEOKA Chemotactic methyltransferase inhibitor Length = 210 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/203 (55%), Positives = 151/203 (74%), Gaps = 4/203 (1%) Query: 5 KNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEELV 64 +N +D+L+E+GNIGAGNAATALS LL K I+MAVP+VQ+ F E+ + +GG E++V Sbjct: 5 RNLTGMHIDILREIGNIGAGNAATALSTLLNKKIEMAVPRVQIATFAEMMESIGGPEQVV 64 Query: 65 YAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIE-LTGNGELGEMELSALNEIGNILAG 123 V+LR+EGEAPGN+FF+L PE A + R+ G + + GE E+ SAL E+GNILAG Sbjct: 65 ACVYLRIEGEAPGNMFFVLPPEQAERFVRRMIGDDSFSFQGEAHELGCSALQELGNILAG 124 Query: 124 SYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHN---E 180 SYLS+LADFT L+++P+VPALA+DM GA+LS+GLL+ ++GD A+LIDT + Sbjct: 125 SYLSALADFTRLNLHPSVPALAIDMIGAVLSFGLLELSRVGDYAILIDTAIYDERRPDES 184 Query: 181 IEGQFFLIPDPESFPKIFKALGV 203 I G FFL+PDPESF IF+ALGV Sbjct: 185 INGHFFLLPDPESFSTIFRALGV 207 >B7GG95.1 B7GG95_ANOFW Chemotaxis protein phosphatase CheC Length = 211 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 111/207 (53%), Positives = 154/207 (74%), Gaps = 4/207 (1%) Query: 4 FKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEEL 63 F+ MD+LKE+GNIGAG+AATALS+LL K I+M +P V++++F+E+ D VGGA+ + Sbjct: 4 FERMDAVHMDILKEIGNIGAGHAATALSKLLNKRIEMTIPDVRIISFDEMMDIVGGADNV 63 Query: 64 VYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIE-LTGNGELGEMELSALNEIGNILA 122 V AVFLR+EG+APGN+FF+L+ E A + ++ G E + E+ LSAL E+GNILA Sbjct: 64 VAAVFLRIEGDAPGNMFFVLSIEQAERFIQQMIGDEQFKLEQDCSELSLSALQELGNILA 123 Query: 123 GSYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGH---N 179 GSYLSSL+DFT L++YP+VPAL++DM GAIL YGL++ ++GD +++DT E H + Sbjct: 124 GSYLSSLSDFTHLNLYPSVPALSIDMIGAILGYGLIEMSRVGDHVIVVDTAIHEEHQPND 183 Query: 180 EIEGQFFLIPDPESFPKIFKALGVPFD 206 + G FFL+PDPESF IF+ALGV D Sbjct: 184 RVNGHFFLLPDPESFHIIFRALGVDRD 210 >C3J424.1 C3J424_9BACI CheC, inhibitor of MCP methylation Length = 210 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 112/203 (55%), Positives = 151/203 (74%), Gaps = 4/203 (1%) Query: 5 KNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEELV 64 +N +D+L+E+GNIGAGNAATALS LL K I+MAVP+VQ+ F E+ + +GG E++V Sbjct: 5 RNLTGMHIDILREIGNIGAGNAATALSTLLNKKIEMAVPRVQIATFAEMMESIGGPEQVV 64 Query: 65 YAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIE-LTGNGELGEMELSALNEIGNILAG 123 V+LR+EGEAPGN+FF+L PE A + R+ G + + GE E+ SAL E+GNILAG Sbjct: 65 ACVYLRIEGEAPGNMFFVLPPEQAERFVRRMIGDDSFSFQGEAHELGCSALQELGNILAG 124 Query: 124 SYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHN---E 180 SYLS+LADFT L+++P+VPALA+DM GA+LS+GLL+ ++GD A+LIDT + Sbjct: 125 SYLSALADFTRLNLHPSVPALAIDMIGAVLSFGLLELSRVGDYAILIDTAIYDERRPDES 184 Query: 181 IEGQFFLIPDPESFPKIFKALGV 203 I G FFL+PDP+SF IF+ALGV Sbjct: 185 INGHFFLLPDPDSFSIIFRALGV 207 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,238,343,364 Number of extensions: 49216620 Number of successful extensions: 121154 Number of sequences better than 1.0e-05: 330 Number of HSP's gapped: 120901 Number of HSP's successfully gapped: 330 Length of query: 208 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 78 Effective length of database: 1,835,964,253 Effective search space: 143205211734 Effective search space used: 143205211734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)