BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0029.p
         (181 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIF3.1 B3KIF3_9BACI Putative uncharacterized protein                125   2e-27
B1DLP2.1 B1DLP2_9BACL Putative uncharacterized protein                100   4e-20

>B3KIF3.1 B3KIF3_9BACI Putative uncharacterized protein
          Length = 179

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 11/182 (6%)

Query: 1   VLVGAVAIVYALRLPARSKNETADRQSLKETEAALELYMADIERDNDNLLQLVSGIKQQS 60
           VL+G  A++YA  LP R +   +  + +KE E  LE YMA+I+ +N+ L++LVS +K++ 
Sbjct: 8   VLLGIAAVLYAFMLPKRREETVSSERVVKEVENTLEGYMAEIQNENEQLVELVSQMKKEL 67

Query: 61  QNNRAALQEEIAGLREQVAELQKSSLLLEARL-TAEEKSLLQLSAAFGKGSAAGTAEQSV 119
              + A QE+++ LR+++  +++     + RL TAEEK     +AA     AA  + ++ 
Sbjct: 68  DAKQQAHQEQVSDLRQRMLAMEQKMTESQTRLRTAEEKLAQAAAAASLSAGAAAASSEAD 127

Query: 120 KEPLTEEPAPKPKPVSSIKQRYPRLFEMHEQGKSIDSIAKTAGLQRGEVQLILQLAKQEE 179
             P          PV SIK RY  LF+++EQGKSID IAK+ GLQRGEVQLI+QLAKQEE
Sbjct: 128 HAP----------PVHSIKSRYAELFDLYEQGKSIDMIAKSTGLQRGEVQLIIQLAKQEE 177

Query: 180 SV 181
           SV
Sbjct: 178 SV 179


>B1DLP2.1 B1DLP2_9BACL Putative uncharacterized protein
          Length = 184

 Score =  100 bits (250), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 108/182 (59%), Gaps = 13/182 (7%)

Query: 1   VLVGAVAIVYALRLPARSKNETADRQSLKETEAALELYMADIERDNDNLLQLVSGIKQQS 60
           VL+GAV  V +L LP + + + A  +  +  E ALE +M + E+D+  L++LVS ++++ 
Sbjct: 9   VLLGAVVAVASLFLPRKQQRQEA--KDTRNMEIALEQFMENSEQDHQQLVKLVSALREEG 66

Query: 61  QNNRAALQEEIAGLREQVAELQKSSLLLE---ARLTAEEKSLLQLSAAFGKGSAAGTAEQ 117
           +    A        + ++AEL+   LLLE   A L  + ++ L ++A     S    A  
Sbjct: 67  KQQTEAS-------KHRLAELESKCLLLEQQLAFLQQQRQNDLLMAAQTMPVSGMAKAAL 119

Query: 118 SVKEPLTEEPAPKPKPVSSIKQRYPRLFEMHEQGKSIDSIAKTAGLQRGEVQLILQLAKQ 177
           + +EPL  E  P+  P S I+ RYP LF+++ QGKSI++IAK   + +GEVQLILQLAKQ
Sbjct: 120 AAEEPLIIESEPQ-SPASGIQLRYPDLFDLYNQGKSIEAIAKKLSMNKGEVQLILQLAKQ 178

Query: 178 EE 179
           EE
Sbjct: 179 EE 180


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.308    0.125    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 867,114,527
Number of extensions: 31489096
Number of successful extensions: 176404
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 176470
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 54
Effective length of database: 1,864,227,298
Effective search space: 100668274092
Effective search space used: 100668274092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 127 (53.5 bits)