BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0028.p
         (215 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIF4.1 B3KIF4_9BACI Putative uncharacterized protein                 69   2e-10

>B3KIF4.1 B3KIF4_9BACI Putative uncharacterized protein
          Length = 204

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 138 PSTPDPAAAGGISVKVPTGATLSGTADLLAEAGVIKDKAEFLKSAISRKINTKIQYGGYN 197
           P TP  A A  I VK+P+G  LS  A+ L  AGVI +K  F+K A   KINT+I  G Y+
Sbjct: 126 PKTPAKAEAS-IQVKIPSGNNLSDVANSLLNAGVIDNKQAFIKKATENKINTRILSGTYS 184

Query: 198 FTKGESIDSIIDKLIT 213
           FT GES +SII K+ T
Sbjct: 185 FTIGESYNSIITKITT 200


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.128    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 595,225,361
Number of extensions: 17077811
Number of successful extensions: 56433
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 56442
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 85
Effective length of database: 1,835,964,253
Effective search space: 156056961505
Effective search space used: 156056961505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 128 (53.9 bits)