BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0027.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIF5.1 B3KIF5_9BACI Ribosomal protein S2 394 e-108 B1DLP4.1 B1DLP4_9BACL Ribosomal protein S2 377 e-103 Q9KA63.1 RS2_BACHD 30S ribosomal protein S2 356 7e-97 C1PV79.1 C1PV79_ALIAC SSU ribosomal protein S2P 352 1e-95 B7DMI4.1 B7DMI4_9BACL Ribosomal protein S2 352 1e-95 >B3KIF5.1 B3KIF5_9BACI Ribosomal protein S2 Length = 232 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/205 (93%), Positives = 201/205 (98%) Query: 1 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFVKSVAGDNGTILFVGTKKQAQDSVKEEAER 60 MD++IFTERNGIYIIDLQKTVKKVEEA+NFVKSVAG+NGTILFVGTKKQAQDSVKEEAER Sbjct: 27 MDKFIFTERNGIYIIDLQKTVKKVEEAFNFVKSVAGENGTILFVGTKKQAQDSVKEEAER 86 Query: 61 SGMFFINQRWLGGTLTNFQTIQKRIDRLKKLELWEEDGTFAVLPKKEVILLRKEKDRLEK 120 GMF+INQRWLGGTLTNF+TIQKRI+RLK+LE WEEDGTF VLPKKEVILLRKEKDRLEK Sbjct: 87 CGMFYINQRWLGGTLTNFETIQKRINRLKQLETWEEDGTFQVLPKKEVILLRKEKDRLEK 146 Query: 121 FLGGIKNMKGLPSALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA 180 FLGGIKNMKGLPSALF+IDPRKERIAVAEARKLGIPIV IVDTNCDPDEIDYVIPGNDDA Sbjct: 147 FLGGIKNMKGLPSALFVIDPRKERIAVAEARKLGIPIVGIVDTNCDPDEIDYVIPGNDDA 206 Query: 181 IRAVKLLTGKMADAVVEAHQGEDTT 205 IRAVKLLTGKMADAVVEAHQGE+TT Sbjct: 207 IRAVKLLTGKMADAVVEAHQGEETT 231 >B1DLP4.1 B1DLP4_9BACL Ribosomal protein S2 Length = 232 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/206 (89%), Positives = 193/206 (93%) Query: 1 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFVKSVAGDNGTILFVGTKKQAQDSVKEEAER 60 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFV+SVA + GT+LFVGTKKQAQDSVKEEAER Sbjct: 27 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFVRSVAAEGGTMLFVGTKKQAQDSVKEEAER 86 Query: 61 SGMFFINQRWLGGTLTNFQTIQKRIDRLKKLELWEEDGTFAVLPKKEVILLRKEKDRLEK 120 G F+INQRWLGGTLTNFQTIQKRIDRL++LE W EDGTF VLPKKEVI+L KEKDRLEK Sbjct: 87 CGNFYINQRWLGGTLTNFQTIQKRIDRLRQLEKWSEDGTFEVLPKKEVIILNKEKDRLEK 146 Query: 121 FLGGIKNMKGLPSALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA 180 FLGGIK MKGLPSALFIIDPRKERIAVAEARKLGIPIV IVDTNCDPDEIDYVIPGNDDA Sbjct: 147 FLGGIKGMKGLPSALFIIDPRKERIAVAEARKLGIPIVGIVDTNCDPDEIDYVIPGNDDA 206 Query: 181 IRAVKLLTGKMADAVVEAHQGEDTTT 206 IRAVKLLT KMADA+VEA+QGE TT Sbjct: 207 IRAVKLLTSKMADAIVEANQGEQTTA 232 >Q9KA63.1 RS2_BACHD 30S ribosomal protein S2 Length = 244 Score = 356 bits (913), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 174/201 (86%), Positives = 185/201 (92%) Query: 1 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFVKSVAGDNGTILFVGTKKQAQDSVKEEAER 60 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFV+ +A D G +LFVGTKKQAQDSVKEEAER Sbjct: 27 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFVRELAADGGKVLFVGTKKQAQDSVKEEAER 86 Query: 61 SGMFFINQRWLGGTLTNFQTIQKRIDRLKKLELWEEDGTFAVLPKKEVILLRKEKDRLEK 120 GM++INQRWLGGTLTNF+TIQKRIDRLKKLE EEDGTF VLPKKEVILL+KE +RLEK Sbjct: 87 CGMYYINQRWLGGTLTNFETIQKRIDRLKKLEKMEEDGTFDVLPKKEVILLKKEMERLEK 146 Query: 121 FLGGIKNMKGLPSALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA 180 FLGGIK+M LP ALF+IDPRKERIA+AEA KL IPIVAIVDTNCDPDEIDYVIPGNDDA Sbjct: 147 FLGGIKDMNSLPDALFVIDPRKERIAIAEAHKLNIPIVAIVDTNCDPDEIDYVIPGNDDA 206 Query: 181 IRAVKLLTGKMADAVVEAHQG 201 IRAVKLLTGKMADAVVEA G Sbjct: 207 IRAVKLLTGKMADAVVEATSG 227 >C1PV79.1 C1PV79_ALIAC SSU ribosomal protein S2P Length = 233 Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 172/207 (83%), Positives = 188/207 (90%) Query: 1 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFVKSVAGDNGTILFVGTKKQAQDSVKEEAER 60 M RYIFTERNGIYIIDLQKTV+KVEEAYNFV+ +A GT+LFVGTKKQAQ++VKEEAER Sbjct: 27 MARYIFTERNGIYIIDLQKTVRKVEEAYNFVRDLAASGGTVLFVGTKKQAQEAVKEEAER 86 Query: 61 SGMFFINQRWLGGTLTNFQTIQKRIDRLKKLELWEEDGTFAVLPKKEVILLRKEKDRLEK 120 GMF++NQRWLGGTLTNF TIQKRI RL++LE EEDGTF VLPKKEVILLRKE++RLEK Sbjct: 87 CGMFYVNQRWLGGTLTNFNTIQKRIRRLQELEQMEEDGTFEVLPKKEVILLRKERERLEK 146 Query: 121 FLGGIKNMKGLPSALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA 180 FLGGIK MK LP ALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA Sbjct: 147 FLGGIKGMKKLPDALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA 206 Query: 181 IRAVKLLTGKMADAVVEAHQGEDTTTA 207 IRAV+LLT K+ADAV+E QG + TTA Sbjct: 207 IRAVRLLTSKIADAVLEGTQGGEETTA 233 >B7DMI4.1 B7DMI4_9BACL Ribosomal protein S2 Length = 233 Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 172/207 (83%), Positives = 188/207 (90%) Query: 1 MDRYIFTERNGIYIIDLQKTVKKVEEAYNFVKSVAGDNGTILFVGTKKQAQDSVKEEAER 60 M RYIFTERNGIYIIDLQKTV+KVEEAYNFV+ +A GT+LFVGTKKQAQ++VKEEAER Sbjct: 27 MARYIFTERNGIYIIDLQKTVRKVEEAYNFVRDLAASGGTVLFVGTKKQAQEAVKEEAER 86 Query: 61 SGMFFINQRWLGGTLTNFQTIQKRIDRLKKLELWEEDGTFAVLPKKEVILLRKEKDRLEK 120 GMF++NQRWLGGTLTNF TIQKRI RL++LE EEDGTF VLPKKEVILLRKE++RLEK Sbjct: 87 CGMFYVNQRWLGGTLTNFNTIQKRIRRLQELEQMEEDGTFEVLPKKEVILLRKERERLEK 146 Query: 121 FLGGIKNMKGLPSALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA 180 FLGGIK MK LP ALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA Sbjct: 147 FLGGIKGMKKLPDALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA 206 Query: 181 IRAVKLLTGKMADAVVEAHQGEDTTTA 207 IRAV+LLT K+ADAV+E QG + TTA Sbjct: 207 IRAVRLLTSKIADAVLEGTQGGEETTA 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,236,354,455 Number of extensions: 51660475 Number of successful extensions: 139402 Number of sequences better than 1.0e-05: 2162 Number of HSP's gapped: 138889 Number of HSP's successfully gapped: 2166 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)