BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0026.p (216 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLP5.1 B1DLP5_9BACL Elongation factor Ts 355 2e-96 B3KIF6.1 B3KIF6_9BACI Elongation factor Ts 351 3e-95 B8FRG4.1 EFTS_DESHD Elongation factor Ts 285 2e-75 B8I6D3.1 B8I6D3_CLOCE Elongation factor Ts 284 3e-75 Q24UF8.1 EFTS_DESHY Elongation factor Ts 284 4e-75 >B1DLP5.1 B1DLP5_9BACL Elongation factor Ts Length = 216 Score = 355 bits (911), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 177/213 (83%), Positives = 186/213 (87%) Query: 1 MAVDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGV 60 MAV A AVKELRERTGAGMLDCKKAL+E NGDITKA ELLREKGLSAAANKAGR+ATEGV Sbjct: 1 MAVSASAVKELRERTGAGMLDCKKALDETNGDITKAIELLREKGLSAAANKAGRVATEGV 60 Query: 61 VESYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXX 120 VESYIHAGGRIGVLVEINCETDFV KTD F+ FARDIAM IAAANP +V Sbjct: 61 VESYIHAGGRIGVLVEINCETDFVAKTDQFRTFARDIAMHIAAANPKFVKREEVPAEEIE 120 Query: 121 XXXXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKIST 180 ILKAQALNEGKPEKIVEKMV+GRISK+YEE+CL+EQ+FVKD DKTIS LLNEKIS Sbjct: 121 KEREILKAQALNEGKPEKIVEKMVDGRISKYYEEYCLMEQSFVKDPDKTISALLNEKISA 180 Query: 181 IGENISIRRFVRYELGEGLEKKVDNFVEEVMAQ 213 IGENISIRRFVRYELGEGLEKKVDNFVEEVMAQ Sbjct: 181 IGENISIRRFVRYELGEGLEKKVDNFVEEVMAQ 213 >B3KIF6.1 B3KIF6_9BACI Elongation factor Ts Length = 216 Score = 351 bits (900), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 176/216 (81%), Positives = 185/216 (85%) Query: 1 MAVDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGV 60 MAV A AVKELRERTGAGMLDCKKAL+E NGDI KA +LREKGLSAAANKAGR+ATEGV Sbjct: 1 MAVTASAVKELRERTGAGMLDCKKALDETNGDIEKAIAVLREKGLSAAANKAGRVATEGV 60 Query: 61 VESYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXX 120 VESYIH GGRIGVLVEINCETDFVGKTD FKEFARDIAM IAAANP YV Sbjct: 61 VESYIHGGGRIGVLVEINCETDFVGKTDQFKEFARDIAMHIAAANPKYVRREEVPSDELE 120 Query: 121 XXXXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKIST 180 ILK QALNEGKPEKIVEKMVEGRI+K+YEE+CLLEQ F+KD DKTIS LLNEKIST Sbjct: 121 KEKEILKNQALNEGKPEKIVEKMVEGRINKYYEEYCLLEQPFIKDPDKTISTLLNEKIST 180 Query: 181 IGENISIRRFVRYELGEGLEKKVDNFVEEVMAQVNQ 216 IGENISIRRF R+ELGEGLEKK DNFVEEVMAQVN+ Sbjct: 181 IGENISIRRFARFELGEGLEKKQDNFVEEVMAQVNK 216 >B8FRG4.1 EFTS_DESHD Elongation factor Ts Length = 217 Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 140/214 (65%), Positives = 167/214 (78%) Query: 3 VDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGVVE 62 V A VKELRERTGAGM+DCKKAL E G++ KA + LREKGL+AAA K GRIA EG+VE Sbjct: 4 VTAAQVKELRERTGAGMMDCKKALNEVGGNMDKAIDFLREKGLAAAAKKEGRIAAEGIVE 63 Query: 63 SYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXXXX 122 +YIH GGRIGV++E+NCETDFV TD FK+FARDIA+QIAAA P Y+ Sbjct: 64 AYIHGGGRIGVMLELNCETDFVANTDGFKQFARDIALQIAAAKPRYLAKADVPEEELEHE 123 Query: 123 XXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKISTIG 182 IL+AQALNEGKPEKIV+KMVEGRISKFY+E CLLEQ FVKD DKTI+ L+ EK + IG Sbjct: 124 KNILRAQALNEGKPEKIVDKMVEGRISKFYKEVCLLEQEFVKDPDKTINDLVLEKTAKIG 183 Query: 183 ENISIRRFVRYELGEGLEKKVDNFVEEVMAQVNQ 216 E I IRRF RYE+GEG+EK+ ++F EVM ++N+ Sbjct: 184 ERIVIRRFTRYEMGEGIEKREEDFAAEVMKEMNR 217 >B8I6D3.1 B8I6D3_CLOCE Elongation factor Ts Length = 215 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 136/213 (63%), Positives = 167/213 (78%) Query: 3 VDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGVVE 62 + A+ V++LRERTGAGM+DCK+AL +ANGD KA ELLREKGLSAAA KAGR+A EG+VE Sbjct: 2 ITAEMVRQLRERTGAGMMDCKRALTDANGDAEKAIELLREKGLSAAAKKAGRVAAEGLVE 61 Query: 63 SYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXXXX 122 +YIH GRIGVLVE+N ETDF + D FK+F +DIAMQIAA+ P YV Sbjct: 62 AYIHGDGRIGVLVEVNIETDFAARGDEFKQFVKDIAMQIAASKPEYVKKEDVPASVIESE 121 Query: 123 XXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKISTIG 182 IL+AQA NEGKPEKI++KMVEGRI KFY E+CLLEQ+F+KD D T+ QL+ EKI+ IG Sbjct: 122 KEILRAQARNEGKPEKIIDKMVEGRIEKFYAENCLLEQSFIKDPDMTVGQLVTEKIAHIG 181 Query: 183 ENISIRRFVRYELGEGLEKKVDNFVEEVMAQVN 215 ENI+IRRF R+E GEG+EKK +NF +EV+ Q+N Sbjct: 182 ENITIRRFARFERGEGVEKKEENFADEVLKQIN 214 >Q24UF8.1 EFTS_DESHY Elongation factor Ts Length = 217 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 139/214 (64%), Positives = 167/214 (78%) Query: 3 VDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGVVE 62 V A VKELRERTGAGM+DCKKAL E G++ KA + LREKGL+AAA K GRIA EG+VE Sbjct: 4 VTAAQVKELRERTGAGMMDCKKALNEVGGNMDKAIDFLREKGLAAAAKKEGRIAAEGIVE 63 Query: 63 SYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXXXX 122 +YIH GGRIGV++E+NCETDFV TD FK+FARDIA+QIAAA P Y+ Sbjct: 64 AYIHGGGRIGVMLELNCETDFVANTDGFKQFARDIALQIAAAKPRYLAKADVPEEELEHE 123 Query: 123 XXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKISTIG 182 IL+AQALNEGKPEKIV+KMVEGRISKFY+E CLLEQ FVKD DKTI+ L+ EK + IG Sbjct: 124 KNILRAQALNEGKPEKIVDKMVEGRISKFYKEVCLLEQEFVKDPDKTINDLVLEKTAKIG 183 Query: 183 ENISIRRFVRYELGEGLEKKVDNFVEEVMAQVNQ 216 E I IRRF RYE+GEG+E++ ++F EVM ++N+ Sbjct: 184 ERIVIRRFTRYEMGEGIERREEDFAAEVMKEMNR 217 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,027,539,899 Number of extensions: 36432811 Number of successful extensions: 139878 Number of sequences better than 1.0e-05: 1622 Number of HSP's gapped: 136359 Number of HSP's successfully gapped: 2917 Length of query: 216 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 86 Effective length of database: 1,835,964,253 Effective search space: 157892925758 Effective search space used: 157892925758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 128 (53.9 bits)