BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0025.p (242 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIF7.1 B3KIF7_9BACI Uridylate kinase 468 e-130 B1DLP6.1 B1DLP6_9BACL Uridylate kinase 441 e-122 C3J431.1 C3J431_9BACI Uridylate kinase 385 e-105 B7YA78.1 B7YA78_9BACI Uridylate kinase 385 e-105 Q5L0K0.1 PYRH_GEOKA Uridylate kinase EC=2.7.4.22 385 e-105 >B3KIF7.1 B3KIF7_9BACI Uridylate kinase Length = 242 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/242 (93%), Positives = 239/242 (98%) Query: 1 LEQPVFKRVVLKVSGESLAGQNGYGIDADTIISIAEQVKEVVELGVQVAIVCGGGNIWRG 60 +EQPV+KRV+LKVSGESL+GQNGYGIDA+TI SIAEQV+EVVELGV+VAIVCGGGNIWRG Sbjct: 1 MEQPVYKRVILKVSGESLSGQNGYGIDAETISSIAEQVREVVELGVEVAIVCGGGNIWRG 60 Query: 61 IAGSASGIDRATADYMGMLATVMNSLALQDALEQIDVPTRVQTSIAMQQIAEPYIRRRAI 120 IAGSA+GIDRATADYMGMLATVMNSLALQDALEQIDVPTRVQTSI+MQQIAEPYIRRRAI Sbjct: 61 IAGSANGIDRATADYMGMLATVMNSLALQDALEQIDVPTRVQTSISMQQIAEPYIRRRAI 120 Query: 121 RHLEKGRVVIFAAGTGNPFFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKDSTAV 180 RHLEKGRVVIFAAGTGNP+FSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKD TA Sbjct: 121 RHLEKGRVVIFAAGTGNPYFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKDETAE 180 Query: 181 KFEQLTYMEVLNKNLGVMDSTASSLCMDNNIPLIVFAITEQGNIKRVVLGEKIGTIVKGS 240 K+EQLTY++VLNKNLGVMDSTASSLCMDNNIPLIVFAITEQGNIKRVVLGEKIGTIVKGS Sbjct: 181 KYEQLTYLDVLNKNLGVMDSTASSLCMDNNIPLIVFAITEQGNIKRVVLGEKIGTIVKGS 240 Query: 241 VD 242 VD Sbjct: 241 VD 242 >B1DLP6.1 B1DLP6_9BACL Uridylate kinase Length = 242 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/238 (89%), Positives = 228/238 (95%) Query: 3 QPVFKRVVLKVSGESLAGQNGYGIDADTIISIAEQVKEVVELGVQVAIVCGGGNIWRGIA 62 QPVFKR+VLKVSGESL+G GYGI+A I IA+QVKEVV LGV+VAIV GGGNIWRGIA Sbjct: 3 QPVFKRIVLKVSGESLSGDQGYGIEASVISEIADQVKEVVALGVEVAIVVGGGNIWRGIA 62 Query: 63 GSASGIDRATADYMGMLATVMNSLALQDALEQIDVPTRVQTSIAMQQIAEPYIRRRAIRH 122 G+A GIDRATADYMGMLATVMNSLALQDALEQI+VPTRVQTSIAMQQIAEPYIRRRAIRH Sbjct: 63 GTAKGIDRATADYMGMLATVMNSLALQDALEQIEVPTRVQTSIAMQQIAEPYIRRRAIRH 122 Query: 123 LEKGRVVIFAAGTGNPFFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKDSTAVKF 182 LEKGRVVIFAAGTGNPFFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKD+TA K+ Sbjct: 123 LEKGRVVIFAAGTGNPFFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKDATAEKY 182 Query: 183 EQLTYMEVLNKNLGVMDSTASSLCMDNNIPLIVFAITEQGNIKRVVLGEKIGTIVKGS 240 E+LTYMEVLNKNLGVMDSTASSLCMDNNIPL+VFAITE+GNIK+VVLGEKIGTIV+GS Sbjct: 183 EELTYMEVLNKNLGVMDSTASSLCMDNNIPLVVFAITEKGNIKKVVLGEKIGTIVRGS 240 >C3J431.1 C3J431_9BACI Uridylate kinase Length = 240 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/239 (77%), Positives = 214/239 (89%) Query: 1 LEQPVFKRVVLKVSGESLAGQNGYGIDADTIISIAEQVKEVVELGVQVAIVCGGGNIWRG 60 +EQP +KRVVLK+SGE+LAG+ G+GI I SIA+QVKEVVELGV+VAIV GGGNIWRG Sbjct: 1 MEQPKYKRVVLKLSGEALAGKQGFGIQPAVIQSIAKQVKEVVELGVEVAIVVGGGNIWRG 60 Query: 61 IAGSASGIDRATADYMGMLATVMNSLALQDALEQIDVPTRVQTSIAMQQIAEPYIRRRAI 120 GS G+DRATADYMGMLATVMN+LALQD+LEQ+ V TRVQTSI M+Q+AEPYIRRRAI Sbjct: 61 KTGSEMGMDRATADYMGMLATVMNALALQDSLEQLGVETRVQTSIEMRQVAEPYIRRRAI 120 Query: 121 RHLEKGRVVIFAAGTGNPFFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKDSTAV 180 RHLEK RVVIFAAGTGNP+FSTDTTAALRAAEIEA+VILMAKN VDGVYSADP D+ AV Sbjct: 121 RHLEKKRVVIFAAGTGNPYFSTDTTAALRAAEIEADVILMAKNNVDGVYSADPNVDANAV 180 Query: 181 KFEQLTYMEVLNKNLGVMDSTASSLCMDNNIPLIVFAITEQGNIKRVVLGEKIGTIVKG 239 K+++L+Y++V+ + LGVMDSTASSLCMDNNIPLIVF+I E+GNIKR VLGE IGTIV+G Sbjct: 181 KYDELSYLDVIKQGLGVMDSTASSLCMDNNIPLIVFSIMEEGNIKRAVLGENIGTIVRG 239 >B7YA78.1 B7YA78_9BACI Uridylate kinase Length = 240 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/239 (77%), Positives = 214/239 (89%) Query: 1 LEQPVFKRVVLKVSGESLAGQNGYGIDADTIISIAEQVKEVVELGVQVAIVCGGGNIWRG 60 +EQP +KRVVLK+SGE+LAG+ G+GI I SIA+QVKEVVELGV+VAIV GGGNIWRG Sbjct: 1 MEQPKYKRVVLKLSGEALAGKQGFGIQPAVIQSIAKQVKEVVELGVEVAIVVGGGNIWRG 60 Query: 61 IAGSASGIDRATADYMGMLATVMNSLALQDALEQIDVPTRVQTSIAMQQIAEPYIRRRAI 120 GS G+DRATADYMGMLATVMN+LALQD+LEQ+ V TRVQTSI M+Q+AEPYIRRRAI Sbjct: 61 KTGSEMGMDRATADYMGMLATVMNALALQDSLEQLGVETRVQTSIEMRQVAEPYIRRRAI 120 Query: 121 RHLEKGRVVIFAAGTGNPFFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKDSTAV 180 RHLEK RVVIFAAGTGNP+FSTDTTAALRAAEIEA+VILMAKN VDGVYSADP D+ AV Sbjct: 121 RHLEKKRVVIFAAGTGNPYFSTDTTAALRAAEIEADVILMAKNNVDGVYSADPNVDANAV 180 Query: 181 KFEQLTYMEVLNKNLGVMDSTASSLCMDNNIPLIVFAITEQGNIKRVVLGEKIGTIVKG 239 K+++L+Y++V+ + LGVMDSTASSLCMDNNIPLIVF+I E+GNIKR VLGE IGTIV+G Sbjct: 181 KYDELSYLDVIKQGLGVMDSTASSLCMDNNIPLIVFSIMEEGNIKRAVLGENIGTIVRG 239 >Q5L0K0.1 PYRH_GEOKA Uridylate kinase EC=2.7.4.22 Length = 240 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/239 (77%), Positives = 214/239 (89%) Query: 1 LEQPVFKRVVLKVSGESLAGQNGYGIDADTIISIAEQVKEVVELGVQVAIVCGGGNIWRG 60 +EQP +KRVVLK+SGE+LAG+ G+GI I SIA+QVKEVVELGV+VAIV GGGNIWRG Sbjct: 1 MEQPKYKRVVLKLSGEALAGKQGFGIQPAVIQSIAKQVKEVVELGVEVAIVVGGGNIWRG 60 Query: 61 IAGSASGIDRATADYMGMLATVMNSLALQDALEQIDVPTRVQTSIAMQQIAEPYIRRRAI 120 GS G+DRATADYMGMLATVMN+LALQD+LEQ+ V TRVQTSI M+Q+AEPYIRRRAI Sbjct: 61 KTGSEMGMDRATADYMGMLATVMNALALQDSLEQLGVETRVQTSIEMRQVAEPYIRRRAI 120 Query: 121 RHLEKGRVVIFAAGTGNPFFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKDSTAV 180 RHLEK RVVIFAAGTGNP+FSTDTTAALRAAEIEA+VILMAKN VDGVYSADP D+ AV Sbjct: 121 RHLEKKRVVIFAAGTGNPYFSTDTTAALRAAEIEADVILMAKNNVDGVYSADPNVDANAV 180 Query: 181 KFEQLTYMEVLNKNLGVMDSTASSLCMDNNIPLIVFAITEQGNIKRVVLGEKIGTIVKG 239 K+++L+Y++V+ + LGVMDSTASSLCMDNNIPLIVF+I E+GNIKR VLGE IGTIV+G Sbjct: 181 KYDELSYLDVIKQGLGVMDSTASSLCMDNNIPLIVFSIMEEGNIKRAVLGENIGTIVRG 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,275,723,780 Number of extensions: 48330738 Number of successful extensions: 159103 Number of sequences better than 1.0e-05: 1946 Number of HSP's gapped: 157255 Number of HSP's successfully gapped: 1947 Length of query: 242 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 110 Effective length of database: 1,817,122,223 Effective search space: 199883444530 Effective search space used: 199883444530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)