BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0024.p (180 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIF8.1 B3KIF8_9BACI Ribosome recycling factor 313 3e-84 B1DLP7.1 B1DLP7_9BACL Ribosome recycling factor 301 2e-80 C0GIU5.1 C0GIU5_9FIRM Ribosome recycling factor 253 6e-66 C3HMI5.1 C3HMI5_BACTU Ribosome-recycling factor 250 3e-65 C3GMS7.1 C3GMS7_BACTU Ribosome-recycling factor 250 3e-65 >B3KIF8.1 B3KIF8_9BACI Ribosome recycling factor Length = 184 Score = 313 bits (803), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 154/180 (85%), Positives = 168/180 (93%) Query: 1 VKKNAEERMEKAILSLKRDLATLRAGRASASLLDRIQVEYYGAPTPINQLANISTPDSRT 60 VKKNAEERMEKAILSLKRDLATLRAGRA+ +LLDRI VEYYGA TP+NQLANISTPDSRT Sbjct: 5 VKKNAEERMEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAQTPLNQLANISTPDSRT 64 Query: 61 LLIQPWDKTSMSDIERAILKSDIGITPANDGTIIRLSIPPLTEERRTELVKFTKKFGEEA 120 L+IQPWDK+S++DIE+AI+KSDIG+TPANDG IRL +P LTEERRTELVK TKKFGEEA Sbjct: 65 LMIQPWDKSSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEEA 124 Query: 121 KVAIRNIRRDANDDIKKMEKNGISEDESHGHQEDIQKSTDKFIAEVDKVLLAKEKEIMEV 180 KVAIRNIRRDANDDIKK+EK ISEDES HQEDIQK+TDKFIAEVDKVL+AKEKEIMEV Sbjct: 125 KVAIRNIRRDANDDIKKLEKTDISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIMEV 184 >B1DLP7.1 B1DLP7_9BACL Ribosome recycling factor Length = 184 Score = 301 bits (770), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 143/180 (79%), Positives = 168/180 (93%) Query: 1 VKKNAEERMEKAILSLKRDLATLRAGRASASLLDRIQVEYYGAPTPINQLANISTPDSRT 60 +KK+AEERMEKAI +LKRDLATLRAGRA+ +LLDR+QVEYYGAPTP+ QLANI+ PDSRT Sbjct: 5 IKKSAEERMEKAIGALKRDLATLRAGRATPALLDRVQVEYYGAPTPVAQLANINVPDSRT 64 Query: 61 LLIQPWDKTSMSDIERAILKSDIGITPANDGTIIRLSIPPLTEERRTELVKFTKKFGEEA 120 L IQPWDK+S++ IE+AI+KSD+G+TP+NDG+ IR+++PPLTEERR+ELVK TKKFGEEA Sbjct: 65 LFIQPWDKSSIAAIEKAIMKSDLGLTPSNDGSAIRITLPPLTEERRSELVKTTKKFGEEA 124 Query: 121 KVAIRNIRRDANDDIKKMEKNGISEDESHGHQEDIQKSTDKFIAEVDKVLLAKEKEIMEV 180 KVAIRNIRRDANDDIKK+EK ISEDES HQEDIQK+TD+FIAEVDKVL+AKEKEIMEV Sbjct: 125 KVAIRNIRRDANDDIKKLEKTTISEDESRRHQEDIQKATDRFIAEVDKVLVAKEKEIMEV 184 >C0GIU5.1 C0GIU5_9FIRM Ribosome recycling factor Length = 185 Score = 253 bits (645), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 124/181 (68%), Positives = 155/181 (85%), Gaps = 1/181 (0%) Query: 1 VKKNAEERMEKAILSLKRDLATLRAGRASASLLDRIQVEYYGAPTPINQLANISTPDSRT 60 V +A+ERMEKA+ +LKRDLATLRAGRA+ SLLD+I V+YYG+ PINQLAN+STP+ R Sbjct: 5 VYSDAQERMEKAVSALKRDLATLRAGRATPSLLDKIVVDYYGSSMPINQLANVSTPEPRL 64 Query: 61 LLIQPWDKTSMSDIERAILKSDIGITPANDGTIIRLSIPPLTEERRTELVKFTKKFGEEA 120 L+IQPWDK +++++ERAILKSD+G+TP +DG+IIRL+IP LTEERR ELVK +KK E+ Sbjct: 65 LVIQPWDKNAVAEVERAILKSDLGLTPVSDGSIIRLAIPQLTEERRKELVKVSKKKAEDG 124 Query: 121 KVAIRNIRRDANDDIKKMEK-NGISEDESHGHQEDIQKSTDKFIAEVDKVLLAKEKEIME 179 +V+IRNIRRDAN+D+K++EK N I+EDE H Q+DIQK TDKFIAE D VL AKEKEIME Sbjct: 125 RVSIRNIRRDANEDLKRLEKDNEITEDELHKAQDDIQKLTDKFIAEADSVLDAKEKEIME 184 Query: 180 V 180 V Sbjct: 185 V 185 >C3HMI5.1 C3HMI5_BACTU Ribosome-recycling factor Length = 185 Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 116/181 (64%), Positives = 155/181 (85%), Gaps = 1/181 (0%) Query: 1 VKKNAEERMEKAILSLKRDLATLRAGRASASLLDRIQVEYYGAPTPINQLANISTPDSRT 60 V K++ E+MEKA+ + R+LAT+RAGRASAS+LD++QV+YYGAPTP+ QLANI+ P++R Sbjct: 5 VLKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARL 64 Query: 61 LLIQPWDKTSMSDIERAILKSDIGITPANDGTIIRLSIPPLTEERRTELVKFTKKFGEEA 120 L+IQP+DKTS+ DIE+AILK+D+G+ P+NDGT+IR++ P LTEERR +LVK KK+ EEA Sbjct: 65 LVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEA 124 Query: 121 KVAIRNIRRDANDDIKKMEKNG-ISEDESHGHQEDIQKSTDKFIAEVDKVLLAKEKEIME 179 KVA+RN+RRD NDD+KK+EK G I+ED+ G+ EDIQK TDK+IA+VD++ KEKEIME Sbjct: 125 KVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 Query: 180 V 180 V Sbjct: 185 V 185 >C3GMS7.1 C3GMS7_BACTU Ribosome-recycling factor Length = 185 Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 116/181 (64%), Positives = 155/181 (85%), Gaps = 1/181 (0%) Query: 1 VKKNAEERMEKAILSLKRDLATLRAGRASASLLDRIQVEYYGAPTPINQLANISTPDSRT 60 V K++ E+MEKA+ + R+LAT+RAGRASAS+LD++QV+YYGAPTP+ QLANI+ P++R Sbjct: 5 VLKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARL 64 Query: 61 LLIQPWDKTSMSDIERAILKSDIGITPANDGTIIRLSIPPLTEERRTELVKFTKKFGEEA 120 L+IQP+DKTS+ DIE+AILK+D+G+ P+NDGT+IR++ P LTEERR +LVK KK+ EEA Sbjct: 65 LVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEA 124 Query: 121 KVAIRNIRRDANDDIKKMEKNG-ISEDESHGHQEDIQKSTDKFIAEVDKVLLAKEKEIME 179 KVA+RN+RRD NDD+KK+EK G I+ED+ G+ EDIQK TDK+IA+VD++ KEKEIME Sbjct: 125 KVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 Query: 180 V 180 V Sbjct: 185 V 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.130 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 952,366,632 Number of extensions: 36345160 Number of successful extensions: 157119 Number of sequences better than 1.0e-05: 1600 Number of HSP's gapped: 155619 Number of HSP's successfully gapped: 1600 Length of query: 180 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 53 Effective length of database: 1,864,227,298 Effective search space: 98804046794 Effective search space used: 98804046794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)