BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0023.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIF9.1 B3KIF9_9BACI Undecaprenyl diphosphate synthase EC=2.5.1.31 400 e-110 Q5WFT2.1 UPPS_BACSK Undecaprenyl pyrophosphate synthetase EC=2.5... 329 1e-88 C2ZT45.1 C2ZT45_BACCE Undecaprenyl pyrophosphate synthetase 329 1e-88 C2ZBL1.1 C2ZBL1_BACCE Undecaprenyl pyrophosphate synthetase 329 1e-88 C5D9B9.1 C5D9B9_9BACI Undecaprenyl diphosphate synthase EC=2.5.1.31 328 3e-88 >B3KIF9.1 B3KIF9_9BACI Undecaprenyl diphosphate synthase EC=2.5.1.31 Length = 255 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 186/255 (72%), Positives = 223/255 (87%), Gaps = 1/255 (0%) Query: 6 MIKRIQAWLSRKDRQEQPVEISPDNIPRHVAVIMDGNGRWAKRRGLPRIVGHQNGMKAVK 65 MIKR+++WL+++D Q Q ++SPDNIP HVA+IMDGNGRWAKRRG+PRIVGHQNGMKAVK Sbjct: 1 MIKRVRSWLNQEDSQ-QTHQLSPDNIPHHVAIIMDGNGRWAKRRGMPRIVGHQNGMKAVK 59 Query: 66 RTTIAANDLGVEFLTMYAFSTENWKRPKEEVDFLMRLPVEFLALELDELIEKNVQVRVMG 125 R IAA++LG++ LTMYAFSTENW RPK+EVDFLM+LP EFLA+EL+ELIEKNVQVR+MG Sbjct: 60 RAAIAADELGIKILTMYAFSTENWTRPKDEVDFLMKLPQEFLAIELEELIEKNVQVRMMG 119 Query: 126 DTDALPAHTRKAMEEAVDRTKHNTGLILNFALNYGSRKEIEDCMRGLGRDIQAGLLSPED 185 + LP+HT AMEEAV +T N GL+LNFALNYGSRKEI + ++ LGR+++ G+L PED Sbjct: 120 HPEDLPSHTVSAMEEAVAKTAGNDGLVLNFALNYGSRKEITESVKALGREVRDGILRPED 179 Query: 186 ITSELIDNRLMTSGLPDPDLLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKTHLLQ 245 IT ELI RL+T LPDPDLLIRTSGE+RLSNFMLWQ+AYSE WFTDAYWPEF K HL++ Sbjct: 180 ITEELIGQRLLTGELPDPDLLIRTSGELRLSNFMLWQLAYSELWFTDAYWPEFTKDHLVE 239 Query: 246 AVAEYQRRTRRYGGL 260 AVA+YQ+RTRRYGGL Sbjct: 240 AVADYQQRTRRYGGL 254 >Q5WFT2.1 UPPS_BACSK Undecaprenyl pyrophosphate synthetase EC=2.5.1.31 Length = 257 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 154/257 (59%), Positives = 188/257 (73%), Gaps = 2/257 (0%) Query: 6 MIKRIQAWLS--RKDRQEQPVEISPDNIPRHVAVIMDGNGRWAKRRGLPRIVGHQNGMKA 63 M++R W E+P I P NIPRHVA+IMDGNGRWAK +GLPRI GH+ GMK Sbjct: 1 MLERFSKWRQAFTDTEDEEPTSIDPQNIPRHVAIIMDGNGRWAKEKGLPRIAGHREGMKT 60 Query: 64 VKRTTIAANDLGVEFLTMYAFSTENWKRPKEEVDFLMRLPVEFLALELDELIEKNVQVRV 123 V + AAN L +E LT+YAFSTENWKRPK EV+FL++LP +L EL LIE+NVQVR+ Sbjct: 61 VNKIVRAANTLNIEILTLYAFSTENWKRPKAEVEFLLKLPERYLKSELPTLIEENVQVRL 120 Query: 124 MGDTDALPAHTRKAMEEAVDRTKHNTGLILNFALNYGSRKEIEDCMRGLGRDIQAGLLSP 183 MG D LP++T A++EA+++TKHNTGLILNFALNYGSR E+ M+ + + +Q G L P Sbjct: 121 MGSKDGLPSYTLHAVDEAIEKTKHNTGLILNFALNYGSRFELTSAMQQIAKKVQQGELMP 180 Query: 184 EDITSELIDNRLMTSGLPDPDLLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKTHL 243 E IT E I LM++ L DPDLLIRTSGE+RLSNFMLWQ+AYSEF F D YWP F + H Sbjct: 181 EHITEETISAHLMSNHLRDPDLLIRTSGELRLSNFMLWQIAYSEFLFMDVYWPNFTEHHF 240 Query: 244 LQAVAEYQRRTRRYGGL 260 +AV YQ R RRYGG+ Sbjct: 241 YKAVLTYQNRGRRYGGV 257 >C2ZT45.1 C2ZT45_BACCE Undecaprenyl pyrophosphate synthetase Length = 258 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 153/257 (59%), Positives = 196/257 (76%), Gaps = 2/257 (0%) Query: 6 MIKRIQAWLSRKDRQEQPV--EISPDNIPRHVAVIMDGNGRWAKRRGLPRIVGHQNGMKA 63 M K + S+KD + E+ IP H+A+IMDGNGRWAKRR +PRI GH GM+ Sbjct: 2 MFKNFPFFKSKKDASFDHLVEEVKKGYIPEHIAIIMDGNGRWAKRRAMPRIAGHHEGMQV 61 Query: 64 VKRTTIAANDLGVEFLTMYAFSTENWKRPKEEVDFLMRLPVEFLALELDELIEKNVQVRV 123 VK+ T A+ LGV+ LT+YAFSTENWKRPK+EVD+LM+LP EFL L ELIE+NVQVRV Sbjct: 62 VKKITKFASKLGVKVLTLYAFSTENWKRPKKEVDYLMKLPEEFLGTFLPELIEENVQVRV 121 Query: 124 MGDTDALPAHTRKAMEEAVDRTKHNTGLILNFALNYGSRKEIEDCMRGLGRDIQAGLLSP 183 +G D LP HTR+AME+A++ TK NTGLILNFALNYGSR EI ++ + +D + G + Sbjct: 122 IGQKDRLPTHTRRAMEKAMEDTKENTGLILNFALNYGSRDEIVSAVQHMMKDSEEGKIRA 181 Query: 184 EDITSELIDNRLMTSGLPDPDLLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKTHL 243 E+++ E+I + LMTS LPDP+LLIRTSGE+R+SNFMLWQ+AYSEFWFTD YWP+F + HL Sbjct: 182 EEVSEEMISSYLMTSSLPDPELLIRTSGELRISNFMLWQIAYSEFWFTDVYWPDFTEEHL 241 Query: 244 LQAVAEYQRRTRRYGGL 260 L A+ ++Q R RR+GG+ Sbjct: 242 LNAITDFQHRGRRFGGV 258 >C2ZBL1.1 C2ZBL1_BACCE Undecaprenyl pyrophosphate synthetase Length = 258 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 153/257 (59%), Positives = 196/257 (76%), Gaps = 2/257 (0%) Query: 6 MIKRIQAWLSRKDRQEQPV--EISPDNIPRHVAVIMDGNGRWAKRRGLPRIVGHQNGMKA 63 M K + S+KD + E+ IP H+A+IMDGNGRWAKRR +PRI GH GM+ Sbjct: 2 MFKNFPFFKSKKDASFDHLVEEVKKGYIPEHIAIIMDGNGRWAKRRAMPRIAGHHEGMQV 61 Query: 64 VKRTTIAANDLGVEFLTMYAFSTENWKRPKEEVDFLMRLPVEFLALELDELIEKNVQVRV 123 VK+ T A+ LGV+ LT+YAFSTENWKRPK+EVD+LM+LP EFL L ELIE+NVQVRV Sbjct: 62 VKKITKFASKLGVKVLTLYAFSTENWKRPKKEVDYLMKLPEEFLGTFLPELIEENVQVRV 121 Query: 124 MGDTDALPAHTRKAMEEAVDRTKHNTGLILNFALNYGSRKEIEDCMRGLGRDIQAGLLSP 183 +G D LP HTR+AME+A++ TK NTGLILNFALNYGSR EI ++ + +D + G + Sbjct: 122 IGQKDRLPTHTRRAMEKAMEDTKENTGLILNFALNYGSRDEIVSAVQHMMKDSEEGKIRA 181 Query: 184 EDITSELIDNRLMTSGLPDPDLLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKTHL 243 E+++ E+I + LMTS LPDP+LLIRTSGE+R+SNFMLWQ+AYSEFWFTD YWP+F + HL Sbjct: 182 EEVSEEMISSYLMTSSLPDPELLIRTSGELRISNFMLWQIAYSEFWFTDVYWPDFTEEHL 241 Query: 244 LQAVAEYQRRTRRYGGL 260 L A+ ++Q R RR+GG+ Sbjct: 242 LNAITDFQHRGRRFGGV 258 >C5D9B9.1 C5D9B9_9BACI Undecaprenyl diphosphate synthase EC=2.5.1.31 Length = 258 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 148/236 (62%), Positives = 188/236 (79%) Query: 25 EISPDNIPRHVAVIMDGNGRWAKRRGLPRIVGHQNGMKAVKRTTIAANDLGVEFLTMYAF 84 EI + IP+HVA+IMDGNGRWAK+R LPR GH GM+ V++ T AN+LG++ L++YAF Sbjct: 23 EIMQNPIPKHVAIIMDGNGRWAKKRALPRAAGHYEGMQVVRKITRFANELGIKILSLYAF 82 Query: 85 STENWKRPKEEVDFLMRLPVEFLALELDELIEKNVQVRVMGDTDALPAHTRKAMEEAVDR 144 STENWKRPK EVD+LM+LP +FL L EL E+NV VRV+G + LP HTR+A+E A+D Sbjct: 83 STENWKRPKSEVDYLMKLPEQFLTTFLPELAEENVNVRVIGHIERLPEHTRRAVERAIDE 142 Query: 145 TKHNTGLILNFALNYGSRKEIEDCMRGLGRDIQAGLLSPEDITSELIDNRLMTSGLPDPD 204 TK NTGLILNFALNYGSR EI M+ + +++Q G LSPE+IT EL+ + LMT L DPD Sbjct: 143 TKENTGLILNFALNYGSRAEITYAMQQIAKEVQKGWLSPEEITEELVSSYLMTKDLTDPD 202 Query: 205 LLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKTHLLQAVAEYQRRTRRYGGL 260 LLIRTSGE+RLSNFMLWQ+AY+EFWFTD WP+F + HLL+A+A +Q+R RR+GG+ Sbjct: 203 LLIRTSGEIRLSNFMLWQLAYTEFWFTDVLWPDFTEQHLLEAIAAFQKRNRRFGGV 258 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,592,995,244 Number of extensions: 65708162 Number of successful extensions: 150144 Number of sequences better than 1.0e-05: 1999 Number of HSP's gapped: 148703 Number of HSP's successfully gapped: 2042 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)