BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0022.p (263 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIG0.1 B3KIG0_9BACI Phosphatidate cytidylyltransferase 330 8e-89 B1DM62.1 B1DM62_9BACL Phosphatidate cytidylyltransferase 244 6e-63 A7GRF2.1 A7GRF2_BACCN Phosphatidate cytidylyltransferase EC=2.7.... 209 2e-52 C0ZF61.1 C0ZF61_BREBN Phosphatidate cytidyltransferase EC=2.7.7.41 206 1e-51 C3BNP8.1 C3BNP8_9BACI Phosphatidate cytidylyltransferase 204 7e-51 >B3KIG0.1 B3KIG0_9BACI Phosphatidate cytidylyltransferase Length = 266 Score = 330 bits (846), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 167/262 (63%), Positives = 201/262 (76%) Query: 1 LITGIVAGAVFLGLCFWGGWPYQLLLTAMALIGYYEFVKMTGTRTFGGTALLGYLSIMCF 60 LITGI+AGAVFLGLCF GG Y LL+ AMAL+GYYEFV+MT T FGGTA +GY ++ Sbjct: 5 LITGIIAGAVFLGLCFIGGLWYHLLILAMALVGYYEFVRMTHTAPFGGTAWIGYAGVLLL 64 Query: 61 MIPWDLMGAREWLSWEQGIWXXXXXXXXVTVFSKNKQDIKITALMFTGIVYIGMGFSYMA 120 + PW + + + WE +W TV +KN DIK +L+F VYIG+GFS++A Sbjct: 65 VFPWGPLDLKLPIPWEHVLWLLLLLFLLATVTTKNTIDIKRISLLFLASVYIGIGFSFIA 124 Query: 121 IARGASDGHGVIWTFLLLCCIWGSDAGAYFVGRSFGRNKLWPAISPNKTVEGALGGVLIS 180 +R A DGHGV WTFLLL IW SDAGAYFVGR+ GR+KLWP+ISPNKTVEGALGGV+I+ Sbjct: 125 ESRHAPDGHGVFWTFLLLASIWASDAGAYFVGRAMGRHKLWPSISPNKTVEGALGGVIIA 184 Query: 181 ILIAACFALFFPDLLTVGRALLIGLSCAVLGQLGDLVQSAYKRVYGIKDSGSLLPGHGGI 240 + + F+ + +LT G A+LIGLSCAV+GQLGDLVQSAYKRVY IKDSG LLPGHGGI Sbjct: 185 VFTSLLFSFYSDGILTAGHAVLIGLSCAVIGQLGDLVQSAYKRVYDIKDSGKLLPGHGGI 244 Query: 241 LDRCDSWIIVFPFVHIVMLMPY 262 LDRCDSWI+VFPFVHI+ L+PY Sbjct: 245 LDRCDSWIVVFPFVHILSLLPY 266 >B1DM62.1 B1DM62_9BACL Phosphatidate cytidylyltransferase Length = 264 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 132/261 (50%), Positives = 175/261 (67%), Gaps = 2/261 (0%) Query: 1 LITGIVAGAVFLGLCFWGGWPYQLLLTAMALIGYYEFVKMTGTRTFGGTALLGYLSIMCF 60 +I G++AGA F+ L GGW Y L +AL+G+ E+ KM G +LLGY ++ F Sbjct: 5 IIWGLLAGAAFVALLLAGGWFYAAALVLLALLGFNEYTKMNGHSWNEPASLLGYAGVLMF 64 Query: 61 MIPWDLMGAREWLSWEQGIWXXXXXXXXVTVFSKNKQDIKITALMFTGIVYIGMGFSYMA 120 ++PW LM S +W VTVF+KNK I +LM G +Y+G GFS M Sbjct: 65 VLPWKLMDVDS-PSAITVLWVLAFLLLSVTVFTKNKITIDGASLMLLGALYVGYGFSSMN 123 Query: 121 IARGASDGHGVIWTFLLLCCIWGSDAGAYFVGRSFGRNKLWPAISPNKTVEGALGGVLIS 180 R HG+ W+FL++ C SDAGAYFVGRS G++KLWP+ISPNKT+EGA+GGV+++ Sbjct: 124 AVRDLGH-HGIFWSFLIITCNVASDAGAYFVGRSLGKHKLWPSISPNKTIEGAVGGVVLA 182 Query: 181 ILIAACFALFFPDLLTVGRALLIGLSCAVLGQLGDLVQSAYKRVYGIKDSGSLLPGHGGI 240 ++ A FA+ P ++ +G +LLIGL AV GQLGDL+QSAYKRV IKDSGS+LPGHGG+ Sbjct: 183 VIAALIFAVCAPHVIDIGTSLLIGLIVAVAGQLGDLIQSAYKRVRNIKDSGSILPGHGGV 242 Query: 241 LDRCDSWIIVFPFVHIVMLMP 261 LDR DSWIIVFP + + L+P Sbjct: 243 LDRFDSWIIVFPLLILTDLIP 263 >A7GRF2.1 A7GRF2_BACCN Phosphatidate cytidylyltransferase EC=2.7.7.41 Length = 263 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 101/257 (39%), Positives = 159/257 (61%), Gaps = 6/257 (2%) Query: 1 LITGIVAGAVFLGLCFWGGWPYQLLLTAMALIGYYEFVKMTGTRTFGGTALLGYLSIMCF 60 +ITG++A A+F+ + F+GG P+ +L+ A+A IG YE ++M +L + + Sbjct: 5 IITGVIAAALFIPIVFYGGLPFTVLVYALASIGLYELIRMNKLPLISVPTVLAAVLLWII 64 Query: 61 MIPWDLMGAREWLSWE--QGIWXXXXXXXXVTVFSKNKQDIKITALMFTGIVYIGMGFSY 118 ++P + +GA +W+ + + + TV SKN A + Y+ MGF Y Sbjct: 65 LVPSNTIGAFDWIGLDKLEITFLIVLLLLSYTVLSKNTFTFDNAAFLLMATTYVAMGFLY 124 Query: 119 MAIARGASDGHGVIWTFLLLCCIWGSDAGAYFVGRSFGRNKLWPAISPNKTVEGALGGVL 178 + R A G+ + F L IW +D+GAYF+G++ G+ KLWP ISPNKT+EG+LGG++ Sbjct: 125 LNETRIA----GIHYVFYALFVIWATDSGAYFIGKAIGKRKLWPEISPNKTIEGSLGGIV 180 Query: 179 ISILIAACFALFFPDLLTVGRALLIGLSCAVLGQLGDLVQSAYKRVYGIKDSGSLLPGHG 238 I++A + LFF + +++ ++ ++ GQ+GDLVQSA+KR YG+KDSG++LPGHG Sbjct: 181 CGIVVAFVYNLFFQVQENIAMLIIVTIAISIFGQIGDLVQSAFKRHYGVKDSGTILPGHG 240 Query: 239 GILDRCDSWIIVFPFVH 255 GILDR DSW+ V P +H Sbjct: 241 GILDRTDSWLFVLPILH 257 >C0ZF61.1 C0ZF61_BREBN Phosphatidate cytidyltransferase EC=2.7.7.41 Length = 261 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 114/259 (44%), Positives = 164/259 (63%), Gaps = 7/259 (2%) Query: 1 LITGIVAGAVFLGLCFWGGWPYQLLLTAMALIGYYEFVKMTGTRTFGGTALLGYLSIMCF 60 +ITG++ GA FL L + GG Y LL+ +A+IGY+EF++M G ++F LLGY ++ Sbjct: 5 IITGLIGGAAFLLLMYAGGVWYSLLVFLLAVIGYFEFMRMAGIQSFYLAGLLGY--VLML 62 Query: 61 MIPWDLMGAREWLS--WEQGIWXXXXXXXXVTVFSKNKQDIKITALMFTGIVYIGMGFSY 118 I W + +WLS + +V KN+ I+ AL G +YIG GF+Y Sbjct: 63 SILWPSLLFSDWLSISMPDLMLPVILLLLIYSVLRKNQFHIEHVALTLVGALYIGYGFTY 122 Query: 119 MAIARGASDGHGVIWTFLLLCCIWGSDAGAYFVGRSFGRNKLWPAISPNKTVEGALGGVL 178 MA R +G + T +++ IW +D+GAYFVG++ G+ KLWP ISPNKTVEGALGG+ Sbjct: 123 MAATRNLPEG--FMLTVMVIMGIWSTDSGAYFVGKAIGKRKLWPEISPNKTVEGALGGLA 180 Query: 179 ISILIAACFALFFPDLLTVGRALLIGLSCAVLGQLGDLVQSAYKRVYGIKDSGSLLPGHG 238 S+LI F + +AL I L ++GQLGDLV+SA+KR + +KDSG L+PGHG Sbjct: 181 ASVLIVLSINASFGHF-AIDQALTIALVAGIIGQLGDLVESAFKRHFHVKDSGQLIPGHG 239 Query: 239 GILDRCDSWIIVFPFVHIV 257 G+LDR DS+++VFP +H++ Sbjct: 240 GVLDRFDSFLLVFPVLHLL 258 >C3BNP8.1 C3BNP8_9BACI Phosphatidate cytidylyltransferase Length = 263 Score = 204 bits (519), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 102/257 (39%), Positives = 156/257 (60%), Gaps = 6/257 (2%) Query: 1 LITGIVAGAVFLGLCFWGGWPYQLLLTAMALIGYYEFVKMTGTRTFGGTALLGYLSIMCF 60 +ITG++A A+F+ + +GG P+ +L+ A+A IG YE ++M +L L + Sbjct: 5 IITGVIAAALFIPIVIYGGVPFTVLVYALASIGLYELIRMNKLTLISVPTVLAALLLWSI 64 Query: 61 MIPWDLMGAREW--LSWEQGIWXXXXXXXXVTVFSKNKQDIKITALMFTGIVYIGMGFSY 118 ++P + G W L+ + + TV SKN + + Y+ MGF Y Sbjct: 65 LVPSNASGVFNWIGLNKLEITFVIVLLLLSYTVLSKNTFTFDNASFLLMATTYVAMGFLY 124 Query: 119 MAIARGASDGHGVIWTFLLLCCIWGSDAGAYFVGRSFGRNKLWPAISPNKTVEGALGGVL 178 + R A G+ + F L IW +D+GAYF+G++ G+ KLWP ISPNKT+EG+LGG++ Sbjct: 125 LNETRIA----GIHFVFYALFVIWATDSGAYFIGKAIGKRKLWPEISPNKTIEGSLGGIV 180 Query: 179 ISILIAACFALFFPDLLTVGRALLIGLSCAVLGQLGDLVQSAYKRVYGIKDSGSLLPGHG 238 I++A + +FF VG +++ ++ ++ GQLGDLVQSA+KR YG+KDSG++LPGHG Sbjct: 181 CGIVVAFVYNMFFQVQGNVGMLIIVTIAISIFGQLGDLVQSAFKRHYGVKDSGTILPGHG 240 Query: 239 GILDRCDSWIIVFPFVH 255 GILDR DSW+ V P +H Sbjct: 241 GILDRTDSWLFVLPILH 257 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.146 0.493 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,636,859,383 Number of extensions: 68193091 Number of successful extensions: 206198 Number of sequences better than 1.0e-05: 1680 Number of HSP's gapped: 203918 Number of HSP's successfully gapped: 1680 Length of query: 263 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 130 Effective length of database: 1,807,701,208 Effective search space: 235001157040 Effective search space used: 235001157040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)