BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0016.p (647 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIG4.1 B3KIG4_9BACI DNA polymerase III, alpha subunit EC=2.7.7.7 1053 0.0 B1DM58.1 B1DM58_9BACL DNA polymerase III, epsilon subunit EC=2.7... 746 0.0 A4IMD2.1 A4IMD2_GEOTN DNA polymerase III alpha subunit 690 0.0 B4BJ04.1 B4BJ04_9BACI DNA polymerase III, alpha subunit EC=2.7.7.7 690 0.0 C5D9C4.1 C5D9C4_9BACI DNA polymerase III, alpha subunit EC=2.7.7.7 684 0.0 >B3KIG4.1 B3KIG4_9BACI DNA polymerase III, alpha subunit EC=2.7.7.7 Length = 1438 Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/640 (77%), Positives = 549/640 (85%) Query: 1 MLYGVEANVVNDSVNIVENPQPLDLKKATYVVFDIETTGLSITRNNITELAAVKMCEGKE 60 M+YG+EANVVND+VNIVE QP++L ATYVVFDIETTGLSIT N I ELAAVKM EGKE Sbjct: 392 MMYGIEANVVNDAVNIVEQAQPIELSSATYVVFDIETTGLSITANKIIELAAVKMHEGKE 451 Query: 61 LDRYTTFVNPHEKIPYHIQQLTNITDEMVKDAPDXXXXXXXXXXXXGDSVLVAHNARFDM 120 + RY TFVNPHE+IPYHIQQLTNI D+MVKDAP+ GD VLVAHNARFDM Sbjct: 452 IGRYATFVNPHERIPYHIQQLTNINDDMVKDAPELEPVLKEFVEFVGDGVLVAHNARFDM 511 Query: 121 GFIQASLTKLGKPVLPNPSLDTLELARLLFPSMKNHRLNTLADKYKVLLESHHRAVDDTV 180 GFIQA+L G L NP LDTLELARL+ P +KNHRLNTLADKYKVLLESHHRA+DDT+ Sbjct: 512 GFIQAALKNAGMDTLENPYLDTLELARLVHPGLKNHRLNTLADKYKVLLESHHRAIDDTI 571 Query: 181 ALGGILNGLLADAEKLKNITRLERLNDYVGNDLSNVRPFHCGIYALNPAGKKNLYKLISM 240 AL GILNGLL+D +K K + L+RLNDYVG DLSN RPFHCGIYALN GKKNLYKL+SM Sbjct: 572 ALAGILNGLLSDVDKTKGVKMLDRLNDYVGMDLSNTRPFHCGIYALNMTGKKNLYKLVSM 631 Query: 241 SHTEYYKRVPCIPKSKLEEHRDGLLVISGCERGEFFEAVLNKTTEEAMEVAQFYDVLEIQ 300 SHTEY+KRVPCIPKSKL+E RDGLLV+SGCE+GEFFE VLNKT EEA E+A FYDVLEIQ Sbjct: 632 SHTEYFKRVPCIPKSKLQEMRDGLLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEIQ 691 Query: 301 PLTMYMHLVDKGFVASPEDLRDVVRKICEIGEQMNKPVIATGNVHYLEPRDKLFRDITIH 360 PLTMYMHLVDKG V SPE+++ + K+ IGE++NKPVIATGNVHYLEPRDKLFRDITIH Sbjct: 692 PLTMYMHLVDKGLVGSPEEIKTAISKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITIH 751 Query: 361 GITGFSPLKDQRKPDAHFRTTDEMLAEFEFLGAEKALEVVVTNTVALAERFEEYPLFPSE 420 GITGFSPLKD RKPDAHFRTT+EML EFEFLG +K EVVVTNT LA+RFE+ LFP + Sbjct: 752 GITGFSPLKDMRKPDAHFRTTEEMLQEFEFLGQDKCYEVVVTNTSELADRFEDLELFPDK 811 Query: 421 LFTPIIEGADEEIRNTCYNTAKSIYGEELPEVVVARLEKELAPIIKYGFSANYLISERLV 480 LFTPI+EGADEEIRNTCY+TAKSIYGE LPEVVVARLEKEL PII+YGFSANYLISE+LV Sbjct: 812 LFTPILEGADEEIRNTCYDTAKSIYGENLPEVVVARLEKELEPIIRYGFSANYLISEKLV 871 Query: 481 KKSNQDGYLXXXXXXXXXXXXATFLGISEVNPLPAHYICVNPECRHSEWFLDGSVPSGFD 540 KKSN+DGYL ATFLGISEVNPLPAHYIC+N +C+HSEWFLDGSVPSGFD Sbjct: 872 KKSNRDGYLVGSRGSVGSSVVATFLGISEVNPLPAHYICLNSDCKHSEWFLDGSVPSGFD 931 Query: 541 LPDKDCPNCGGKLRGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNFTKTMFGPDN 600 LPDK CP CG ++GEGQDIPFETFLGFKGDKVPDIDLNFSGEYQP+AHNFTK MFG N Sbjct: 932 LPDKACPECGNMMKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNFTKEMFGEKN 991 Query: 601 VFRAGTIGTVAEKTAFGFTKKYEEHHQKRWRGAEVGRLAA 640 VFRAGTIGTVAEKTAFGF KKYEEH+ KRWRGAE+ RLA+ Sbjct: 992 VFRAGTIGTVAEKTAFGFAKKYEEHNNKRWRGAELNRLAS 1031 >B1DM58.1 B1DM58_9BACL DNA polymerase III, epsilon subunit EC=2.7.7.7 Length = 942 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/517 (69%), Positives = 423/517 (81%), Gaps = 1/517 (0%) Query: 1 MLYGVEANVVNDSVNIVENPQPLDLKKATYVVFDIETTGLSITRNNITELAAVKMCEGKE 60 +L+G+EANVVND+V +V N + L A Y+VFDIETTGLSI N I ELA VKM EGKE Sbjct: 392 VLFGLEANVVNDAVPMVLNSREAALATAEYIVFDIETTGLSIINNKIIELAGVKMREGKE 451 Query: 61 LDRYTTFVNPHEKIPYHIQQLTNITDEMVKDAPDXXXXXXXXXXXXGDSVLVAHNARFDM 120 +DR++TF+NPHEKIPYHIQQLTNI DEMVKDAP+ GDS+LVAHNARFD+ Sbjct: 452 VDRFSTFINPHEKIPYHIQQLTNINDEMVKDAPELEPKLREFIDFIGDSILVAHNARFDI 511 Query: 121 GFIQASLTKLGKPVLPNPSLDTLELARLLFPSMKNHRLNTLADKYKVLLESHHRAVDDTV 180 GFIQA+L +G P + NP LDTLELAR L P+MKNHRLNTL+ KYKV L++HHRAVDD+V Sbjct: 512 GFIQANLKSIGMPDVTNPVLDTLELARFLHPTMKNHRLNTLSAKYKVSLDNHHRAVDDSV 571 Query: 181 ALGGILNGLLADAEKLKNITRLERLNDYVGNDLSNVRPFHCGIYALNPAGKKNLYKLISM 240 ALGG+L GL+ DA + +NIT L +LNDYVG D+SN RPFHC IYALN AGKKNL+K++S+ Sbjct: 572 ALGGVLFGLINDAAE-RNITGLHQLNDYVGLDISNSRPFHCNIYALNAAGKKNLFKMVSI 630 Query: 241 SHTEYYKRVPCIPKSKLEEHRDGLLVISGCERGEFFEAVLNKTTEEAMEVAQFYDVLEIQ 300 SHTE++KRV CIPKSKL + R+G+LVISGCE+GEFFE VLNK+ EEA+EVA+FYD LEIQ Sbjct: 631 SHTEHFKRVACIPKSKLVDMREGILVISGCEKGEFFETVLNKSYEEALEVARFYDALEIQ 690 Query: 301 PLTMYMHLVDKGFVASPEDLRDVVRKICEIGEQMNKPVIATGNVHYLEPRDKLFRDITIH 360 P+ YMHLVDKG V S ++ +R+ICEIG+++ KPVIATGNVHYL PRDKL+RDI IH Sbjct: 691 PVDFYMHLVDKGLVGSRAEIEQAMRRICEIGDELGKPVIATGNVHYLNPRDKLYRDIAIH 750 Query: 361 GITGFSPLKDQRKPDAHFRTTDEMLAEFEFLGAEKALEVVVTNTVALAERFEEYPLFPSE 420 GITGFSPLKD RKPDAH RTT+EML EF FLG +A EVVV NTV L+ RFE + +FP + Sbjct: 751 GITGFSPLKDLRKPDAHLRTTEEMLREFAFLGEARAYEVVVKNTVELSNRFEPFEMFPDK 810 Query: 421 LFTPIIEGADEEIRNTCYNTAKSIYGEELPEVVVARLEKELAPIIKYGFSANYLISERLV 480 LFTPIIEGA+EEIRNTCY+TAKS+YG++LP+VV+ RLEKEL PIIK+GFSANYLISE+LV Sbjct: 811 LFTPIIEGAEEEIRNTCYDTAKSMYGDDLPQVVIDRLEKELVPIIKFGFSANYLISEKLV 870 Query: 481 KKSNQDGYLXXXXXXXXXXXXATFLGISEVNPLPAHY 517 KKSN DGYL ATFLGISEVNPLPAHY Sbjct: 871 KKSNADGYLVGSRGSVGSSVVATFLGISEVNPLPAHY 907 >A4IMD2.1 A4IMD2_GEOTN DNA polymerase III alpha subunit Length = 1442 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/642 (54%), Positives = 435/642 (67%), Gaps = 5/642 (0%) Query: 1 MLYGVEANVVNDSVNIVENPQPLDLKKATYVVFDIETTGLSITRNNITELAAVKMCEGKE 60 +LYG+EAN+V+D V I N L TYVVFD+ETTGLS N I ELAAVK+ +G+ Sbjct: 398 VLYGMEANIVDDGVPIAYNEAHRRLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEI 457 Query: 61 LDRYTTFVNPHEKIPYHIQQLTNITDEMVKDAPDXXXXXXXXXXXXGDSVLVAHNARFDM 120 +DR+ +F NPH + +LT ITDEMVKDAPD GDS L AHNA FD+ Sbjct: 458 IDRFMSFANPHHPLSVTTMELTGITDEMVKDAPDVEEVLRRFIDWVGDSTLAAHNASFDI 517 Query: 121 GFIQASLTKLGKPVLPNPSLDTLELARLLFPSMKNHRLNTLADKYKVLLESHHRAVDDTV 180 GF+ A L K+G + NP +DTLELAR L+P +KNHRLNTL K+ + L HHRA+ D Sbjct: 518 GFLNAGLAKMGLGKVINPVIDTLELARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAE 577 Query: 181 ALGGILNGLLADAEKLKNITRLERLNDYVGNDLSN--VRPFHCGIYALNPAGKKNLYKLI 238 A G +L LL +AE+ + I + LN ++ S RPFH + A N G KNL+KL+ Sbjct: 578 ATGHLLMRLLKEAEE-RGILYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFKLV 636 Query: 239 SMSHTEYYKRVPCIPKSKLEEHRDGLLVISGCERGEFFEAVLNKTTEEAMEVAQFYDVLE 298 S+SH +Y+ RVP IP+S L +HRDGLLV SGC++GE F+ ++ K EE E+A+FYD LE Sbjct: 637 SLSHVQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFYDFLE 696 Query: 299 IQPLTMYMHLVDKGFVASPEDLRDVVRKICEIGEQMNKPVIATGNVHYLEPRDKLFRDIT 358 + P +Y L++ +V E ++D++R I +GE+++ PV+ATGNVHYL P DK++R I Sbjct: 697 VHPPAVYKPLIEMDYVKDEEMIKDIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKIL 756 Query: 359 IHGITGFSPLKDQRKPDAHFRTTDEMLAEFEFLGAEKALEVVVTNTVALAERFEEYPLFP 418 IH G +PL PD +FRTTDEML F FLGAEKA E+VV NT +A E Sbjct: 757 IHSQGGANPLNRHELPDVYFRTTDEMLDCFSFLGAEKAKEIVVDNTQKIASLIGEVKPIK 816 Query: 419 SELFTPIIEGADEEIRNTCYNTAKSIYGEELPEVVVARLEKELAPIIKYGFSANYLISER 478 +L+TP IEGAD+EIR Y AK IYG+ LP++V RLEKEL II +GF+ YLIS + Sbjct: 817 DDLYTPRIEGADDEIREMSYRRAKDIYGDPLPKIVEERLEKELKSIIGHGFAVIYLISHK 876 Query: 479 LVKKSNQDGYLXXXXXXXXXXXXATFLGISEVNPLPAHYICVNPECRHSEWFLDGSVPSG 538 LVKKS DGYL AT I+EVNPLP HY+C P C+HSE+F DGSV SG Sbjct: 877 LVKKSLDDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYVC--PNCKHSEFFNDGSVGSG 934 Query: 539 FDLPDKDCPNCGGKLRGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNFTKTMFGP 598 FDLPDK+CP CG K + +G DIPFETFLGFKGDKVPDIDLNFSGEYQP AHN+TK +FG Sbjct: 935 FDLPDKNCPQCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGE 994 Query: 599 DNVFRAGTIGTVAEKTAFGFTKKYEEHHQKRWRGAEVGRLAA 640 DNV+RAGTIGTVA+KTA+GF K Y H RGAE+ RLAA Sbjct: 995 DNVYRAGTIGTVADKTAYGFVKGYASDHNLELRGAEIDRLAA 1036 >B4BJ04.1 B4BJ04_9BACI DNA polymerase III, alpha subunit EC=2.7.7.7 Length = 1434 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/642 (54%), Positives = 435/642 (67%), Gaps = 5/642 (0%) Query: 1 MLYGVEANVVNDSVNIVENPQPLDLKKATYVVFDIETTGLSITRNNITELAAVKMCEGKE 60 +LYG+EAN+V+D V I N L TYVVFD+ETTGLS N I ELAAVK+ +G+ Sbjct: 390 VLYGMEANIVDDGVPIAYNEAHRRLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEI 449 Query: 61 LDRYTTFVNPHEKIPYHIQQLTNITDEMVKDAPDXXXXXXXXXXXXGDSVLVAHNARFDM 120 +DR+ +F NPH + +LT ITDEMVKDAPD GDS L AHNA FD+ Sbjct: 450 IDRFMSFANPHHPLSVTTMELTGITDEMVKDAPDVEEVLRRFIDWVGDSTLAAHNASFDI 509 Query: 121 GFIQASLTKLGKPVLPNPSLDTLELARLLFPSMKNHRLNTLADKYKVLLESHHRAVDDTV 180 GF+ A L K+G + NP +DTLELAR L+P +KNHRLNTL K+ + L HHRA+ D Sbjct: 510 GFLNAGLAKMGLGKVINPVIDTLELARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAE 569 Query: 181 ALGGILNGLLADAEKLKNITRLERLNDYVGNDLSN--VRPFHCGIYALNPAGKKNLYKLI 238 A G +L LL +AE+ + I + LN ++ S RPFH + A N G KNL+KL+ Sbjct: 570 ATGHLLMRLLKEAEE-RGILYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFKLV 628 Query: 239 SMSHTEYYKRVPCIPKSKLEEHRDGLLVISGCERGEFFEAVLNKTTEEAMEVAQFYDVLE 298 S+SH +Y+ RVP IP+S L +HRDGLLV SGC++GE F+ ++ K EE E+A+FYD LE Sbjct: 629 SLSHVQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFYDFLE 688 Query: 299 IQPLTMYMHLVDKGFVASPEDLRDVVRKICEIGEQMNKPVIATGNVHYLEPRDKLFRDIT 358 + P +Y L++ +V E ++D++R I +GE+++ PV+ATGNVHYL P DK++R I Sbjct: 689 VHPPAVYKPLIEMDYVKDEEMIKDIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKIL 748 Query: 359 IHGITGFSPLKDQRKPDAHFRTTDEMLAEFEFLGAEKALEVVVTNTVALAERFEEYPLFP 418 IH G +PL PD +FRTTDEML F FLGAEKA E+VV NT +A E Sbjct: 749 IHSQGGANPLNRHELPDVYFRTTDEMLDCFSFLGAEKAKEIVVDNTQKIASLIGEVKPIK 808 Query: 419 SELFTPIIEGADEEIRNTCYNTAKSIYGEELPEVVVARLEKELAPIIKYGFSANYLISER 478 +L+TP IEGAD+EIR Y AK IYG+ LP++V RLEKEL II +GF+ YLIS + Sbjct: 809 DDLYTPRIEGADDEIREMSYRRAKDIYGDPLPKIVEERLEKELKSIIGHGFAVIYLISHK 868 Query: 479 LVKKSNQDGYLXXXXXXXXXXXXATFLGISEVNPLPAHYICVNPECRHSEWFLDGSVPSG 538 LVKKS DGYL AT I+EVNPLP HY+C P C+HSE+F DGSV SG Sbjct: 869 LVKKSLDDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYVC--PNCKHSEFFNDGSVGSG 926 Query: 539 FDLPDKDCPNCGGKLRGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNFTKTMFGP 598 FDLPDK+CP CG K + +G DIPFETFLGFKGDKVPDIDLNFSGEYQP AHN+TK +FG Sbjct: 927 FDLPDKNCPQCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGE 986 Query: 599 DNVFRAGTIGTVAEKTAFGFTKKYEEHHQKRWRGAEVGRLAA 640 DNV+RAGTIGTVA+KTA+GF K Y H RGAE+ RLAA Sbjct: 987 DNVYRAGTIGTVADKTAYGFVKGYASDHNLELRGAEIDRLAA 1028 >C5D9C4.1 C5D9C4_9BACI DNA polymerase III, alpha subunit EC=2.7.7.7 Length = 1435 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/642 (53%), Positives = 439/642 (68%), Gaps = 5/642 (0%) Query: 1 MLYGVEANVVNDSVNIVENPQPLDLKKATYVVFDIETTGLSITRNNITELAAVKMCEGKE 60 +LYGVEAN+V+D V I N L + TYVVFD+ETTGLS N I ELAAVK+ +G+ Sbjct: 391 VLYGVEANIVDDGVPIAYNEAHRLLSEDTYVVFDVETTGLSAVYNTIIELAAVKVKDGEI 450 Query: 61 LDRYTTFVNPHEKIPYHIQQLTNITDEMVKDAPDXXXXXXXXXXXXGDSVLVAHNARFDM 120 +DR+T+F NPH + +LT ITD+M+KDAPD GDS+LVAHNA FD+ Sbjct: 451 IDRFTSFANPHHPLSITTIELTGITDDMLKDAPDVEEVLRQFYDWMGDSILVAHNASFDI 510 Query: 121 GFIQASLTKLGKPVLPNPSLDTLELARLLFPSMKNHRLNTLADKYKVLLESHHRAVDDTV 180 GF+ TKLG + NP +DTLELAR L+P +KNHRLNTL K+ + L HHRA+ D Sbjct: 511 GFLNVGFTKLGLGKVTNPVIDTLELARFLYPELKNHRLNTLCKKFDIELTQHHRAIYDAE 570 Query: 181 ALGGILNGLLADAEKLKNITRLERLNDYVGNDLS--NVRPFHCGIYALNPAGKKNLYKLI 238 A G +L LL DA++ + I + LN+ ++S RPFH + A N G KNL+KL+ Sbjct: 571 ATGYLLMRLLKDAQE-RGILYHDELNERSKEEVSYQRSRPFHVTLLAQNDIGLKNLFKLV 629 Query: 239 SMSHTEYYKRVPCIPKSKLEEHRDGLLVISGCERGEFFEAVLNKTTEEAMEVAQFYDVLE 298 S+SH +Y+ RVP IP+S L++HR+G+LV SGC++GE F+ ++ K EE E+A+FYD LE Sbjct: 630 SLSHVKYFYRVPRIPRSVLQQHREGILVGSGCDKGEVFDNMIQKAPEEVEEIAKFYDFLE 689 Query: 299 IQPLTMYMHLVDKGFVASPEDLRDVVRKICEIGEQMNKPVIATGNVHYLEPRDKLFRDIT 358 + P +Y L++ +V +++++RKI +GE++N PV+ATGNVHYL P DK++R I Sbjct: 690 VHPPEVYKPLIEMDYVKDENMIKEIIRKIVMLGEKLNIPVVATGNVHYLNPEDKIYRKIL 749 Query: 359 IHGITGFSPLKDQRKPDAHFRTTDEMLAEFEFLGAEKALEVVVTNTVALAERFEEYPLFP 418 IH G +PL PD +FRTTDEML F FLG EKA E+VV NT +A+ E Sbjct: 750 IHSQGGANPLNRYELPDVYFRTTDEMLKCFSFLGEEKAKEIVVMNTQKIADLIGEVKPIK 809 Query: 419 SELFTPIIEGADEEIRNTCYNTAKSIYGEELPEVVVARLEKELAPIIKYGFSANYLISER 478 +L+TP IEGA+EEIR Y AK IYG+ LPE+V RLEKEL II +GF+ YLIS + Sbjct: 810 DKLYTPRIEGAEEEIREMSYRRAKEIYGDPLPEIVEQRLEKELKSIIGHGFAVIYLISHK 869 Query: 479 LVKKSNQDGYLXXXXXXXXXXXXATFLGISEVNPLPAHYICVNPECRHSEWFLDGSVPSG 538 LVKKS DGYL AT I+EVNPLP HY+C P C+HSE+F DGSV SG Sbjct: 870 LVKKSLDDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYVC--PNCKHSEFFNDGSVGSG 927 Query: 539 FDLPDKDCPNCGGKLRGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNFTKTMFGP 598 FDLPDK+CP CG K + +G DIPFETFLGFKGDKVPDIDLNFSGEYQP AHN+TK +FG Sbjct: 928 FDLPDKNCPKCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGE 987 Query: 599 DNVFRAGTIGTVAEKTAFGFTKKYEEHHQKRWRGAEVGRLAA 640 DNV+RAGTIGTVA+KTA+GF K Y + R AE+ RLAA Sbjct: 988 DNVYRAGTIGTVADKTAYGFVKGYASDLNLQLRSAEIDRLAA 1029 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,730,880,748 Number of extensions: 157853359 Number of successful extensions: 358368 Number of sequences better than 1.0e-05: 2850 Number of HSP's gapped: 354969 Number of HSP's successfully gapped: 2852 Length of query: 647 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 505 Effective length of database: 1,722,912,073 Effective search space: 870070596865 Effective search space used: 870070596865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)