BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0014.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIG5.1 B3KIG5_9BACI Putative uncharacterized protein 206 6e-52 B1DM56.1 B1DM56_9BACL Putative uncharacterized protein 204 2e-51 A4IMD3.1 A4IMD3_GEOTN Putative uncharacterized protein 164 2e-39 Q5L0J2.1 Y1259_GEOKA UPF0090 protein GK1259 163 5e-39 B4BJ03.1 B4BJ03_9BACI Putative uncharacterized protein 163 5e-39 >B3KIG5.1 B3KIG5_9BACI Putative uncharacterized protein Length = 153 Score = 206 bits (524), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 111/150 (74%), Positives = 124/150 (82%) Query: 6 SKIKQTVEQMLGPYLEDNGFELVDVEYVKEGSNWFLRIFVDKEGGIDIDDCGTISEYFSQ 65 SKIK TVE+M+ PYL+++GFELVDVEYVKEGSNWFLR+FVDK+GGIDIDDCG ISE+ SQ Sbjct: 4 SKIKTTVEEMVQPYLDEHGFELVDVEYVKEGSNWFLRVFVDKDGGIDIDDCGLISEHLSQ 63 Query: 66 KLDENDPIPEAYFLEVSSPGAERPLXXXXXXXXXXXXXXXXTVYEPIQGLKEFEGRLLSF 125 KLDENDPIP AYFLEVSSPGAERPL TVYEPI GLKEFEG+L SF Sbjct: 64 KLDENDPIPTAYFLEVSSPGAERPLKKKEDVAKSVGKNVFVTVYEPINGLKEFEGKLESF 123 Query: 126 ENEELLISAGKKEHVVPYAKVASARLAIIF 155 +NEEL+I KK+HV+PYAKVASARLAIIF Sbjct: 124 DNEELVIQTAKKQHVIPYAKVASARLAIIF 153 >B1DM56.1 B1DM56_9BACL Putative uncharacterized protein Length = 153 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 96/150 (64%), Positives = 117/150 (78%) Query: 6 SKIKQTVEQMLGPYLEDNGFELVDVEYVKEGSNWFLRIFVDKEGGIDIDDCGTISEYFSQ 65 SKIK VE M+ P+L+ NGFELVD+EYVKEGSN+FLR+FVDKEGGIDID+CG +SE+ S+ Sbjct: 4 SKIKTVVEAMVTPFLDSNGFELVDIEYVKEGSNYFLRVFVDKEGGIDIDECGKVSEFLSE 63 Query: 66 KLDENDPIPEAYFLEVSSPGAERPLXXXXXXXXXXXXXXXXTVYEPIQGLKEFEGRLLSF 125 +LD+NDP+ +AYFLEVSSPGAERPL T YEPI G KEFEG+L +F Sbjct: 64 ELDKNDPVSDAYFLEVSSPGAERPLKKPDDVRKAVGKHVYITTYEPIDGSKEFEGQLTAF 123 Query: 126 ENEELLISAGKKEHVVPYAKVASARLAIIF 155 + E+ + GKKEHV+PYAKVASARLAI+F Sbjct: 124 DGEQATVKIGKKEHVIPYAKVASARLAIVF 153 >A4IMD3.1 A4IMD3_GEOTN Putative uncharacterized protein Length = 170 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 82/157 (52%), Positives = 105/157 (66%), Gaps = 4/157 (2%) Query: 3 TPKSKIKQTVEQMLGPYLEDNGFELVDVEYVKEGSNWFLRIFVDKEGGIDIDDCGTISEY 62 T K+ +TVEQ++ P L + G ELVD+EYVKEG NWFLR+F+D + G+DI+ CG +SE Sbjct: 13 TMSKKVTETVEQLVTPILNEMGLELVDIEYVKEGKNWFLRVFIDSDDGVDIEQCGVVSEK 72 Query: 63 FSQKLDENDPIPEAYFLEVSSPGAERPLXXXXXXXXXXXXXXXXTVYEPIQGLKEFEGRL 122 S+KLDE DPIP YFLEVSSPGAERPL YEPI G K+FEG L Sbjct: 73 LSEKLDEVDPIPHNYFLEVSSPGAERPLKNEKDFVKAIGKHVYIKTYEPIAGEKQFEGEL 132 Query: 123 LSFENEELLISA---GKKEHV-VPYAKVASARLAIIF 155 +F+ + +S G+++ V +PY KVASARLA+IF Sbjct: 133 TAFDGTTVTLSVKDRGRQKTVAIPYEKVASARLAVIF 169 >Q5L0J2.1 Y1259_GEOKA UPF0090 protein GK1259 Length = 157 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 81/153 (52%), Positives = 105/153 (68%), Gaps = 4/153 (2%) Query: 7 KIKQTVEQMLGPYLEDNGFELVDVEYVKEGSNWFLRIFVDKEGGIDIDDCGTISEYFSQK 66 K+ +TVEQ++ P L++ G ELVD+EYVKEG NWFLR+F+D + G+DI+ CG +SE S+K Sbjct: 4 KVTETVEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDDGVDIEQCGAVSEKLSEK 63 Query: 67 LDENDPIPEAYFLEVSSPGAERPLXXXXXXXXXXXXXXXXTVYEPIQGLKEFEGRLLSFE 126 LDE DPIP YFLEVSSPGAERPL YEPI+G K+FEG L +F+ Sbjct: 64 LDEVDPIPHNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGEKQFEGELTAFD 123 Query: 127 NEE---LLISAGKKEHV-VPYAKVASARLAIIF 155 L+ G+++ V +PY KVASARLA+IF Sbjct: 124 GTTVTLLVKDRGRQKTVAIPYEKVASARLAVIF 156 >B4BJ03.1 B4BJ03_9BACI Putative uncharacterized protein Length = 157 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 81/153 (52%), Positives = 104/153 (67%), Gaps = 4/153 (2%) Query: 7 KIKQTVEQMLGPYLEDNGFELVDVEYVKEGSNWFLRIFVDKEGGIDIDDCGTISEYFSQK 66 K+ +TVEQ++ P L + G ELVD+EYVKEG NWFLR+F+D + G+DI+ CG +SE S+K Sbjct: 4 KVTETVEQLVTPILNEMGLELVDIEYVKEGKNWFLRVFIDSDDGVDIEQCGVVSEKLSEK 63 Query: 67 LDENDPIPEAYFLEVSSPGAERPLXXXXXXXXXXXXXXXXTVYEPIQGLKEFEGRLLSFE 126 LDE DPIP YFLEVSSPGAERPL YEPI G K+FEG L +F+ Sbjct: 64 LDEVDPIPHNYFLEVSSPGAERPLKNEKDFVKAIGKHVYIKTYEPIAGEKQFEGELTAFD 123 Query: 127 NEELLISA---GKKEHV-VPYAKVASARLAIIF 155 + +S G+++ V +PY KVASARLA+IF Sbjct: 124 GTTVTLSVKDRGRQKTVAIPYEKVASARLAVIF 156 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 864,718,051 Number of extensions: 32338665 Number of successful extensions: 52260 Number of sequences better than 1.0e-05: 1006 Number of HSP's gapped: 51415 Number of HSP's successfully gapped: 1006 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)