BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0011.p
         (107 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIG8.1 B3KIG8_9BACI Ribosomal protein L7Ae/L30e/S12e/Gadd45         155   7e-37
B1DM53.1 B1DM53_9BACL Ribosomal protein L7Ae/L30e/S12e/Gadd45         131   2e-29
C1PG79.1 C1PG79_BACCO Ribosomal protein L7Ae/L30e/S12e/Gadd45         102   8e-21
A8VS61.1 A8VS61_9BACI CheD family protein                             101   3e-20
Q5WFU1.1 Q5WFU1_BACSK L7AE family ribosomal protein                   100   5e-20

>B3KIG8.1 B3KIG8_9BACI Ribosomal protein L7Ae/L30e/S12e/Gadd45
          Length = 119

 Score =  155 bits (393), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/95 (76%), Positives = 87/95 (91%)

Query: 1   MSKALSYLGLAMRAGKIVTGDEAVLKAVRSSEARLVVLAGDASENTQKKFRDKCGTYDIP 60
           M++ALS LGLAMRAGK+VTGDE VLKA+RSSEA+LV+LAGDAS+NT KKFRDKCG+Y+IP
Sbjct: 13  MNRALSQLGLAMRAGKVVTGDEIVLKAIRSSEAKLVILAGDASDNTTKKFRDKCGSYNIP 72

Query: 61  LVIAFHRDELGASIGKDQRVVLAVTDKGFAEMISR 95
           LVI F R+ LG S+GK +RVVLAVTD+GFAEMIS+
Sbjct: 73  LVIGFDRESLGTSVGKPERVVLAVTDQGFAEMISK 107


>B1DM53.1 B1DM53_9BACL Ribosomal protein L7Ae/L30e/S12e/Gadd45
          Length = 118

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 77/94 (81%)

Query: 1  MSKALSYLGLAMRAGKIVTGDEAVLKAVRSSEARLVVLAGDASENTQKKFRDKCGTYDIP 60
          M+K LS LG+AMRAGK++TGDE VLKAVR  EA+LV++AGDAS NT+KKFRDKC TY + 
Sbjct: 3  MNKGLSSLGMAMRAGKLITGDEIVLKAVRKGEAQLVIIAGDASPNTKKKFRDKCNTYGVQ 62

Query: 61 LVIAFHRDELGASIGKDQRVVLAVTDKGFAEMIS 94
          L  AF RD+LG +IGK +RVVLAVTD  F +MI+
Sbjct: 63 LAEAFDRDQLGKAIGKPERVVLAVTDAKFGKMIA 96


>C1PG79.1 C1PG79_BACCO Ribosomal protein L7Ae/L30e/S12e/Gadd45
          Length = 102

 Score =  102 bits (255), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 73/98 (74%)

Query: 3   KALSYLGLAMRAGKIVTGDEAVLKAVRSSEARLVVLAGDASENTQKKFRDKCGTYDIPLV 62
           +A+S LGLA +AGKIV+G+E VLK +R+ +A+LV+L+ DAS NT KK  DKC  Y +P+ 
Sbjct: 5   QAMSLLGLAFKAGKIVSGEEPVLKEIRAGQAKLVLLSKDASSNTSKKLLDKCRFYHVPVR 64

Query: 63  IAFHRDELGASIGKDQRVVLAVTDKGFAEMISRVLGDT 100
               R+ LG +IGK+ RV +AV+D+GFAE ++ +L ++
Sbjct: 65  WIETREMLGKAIGKEARVAVAVSDRGFAEKLAELLDES 102


>A8VS61.1 A8VS61_9BACI CheD family protein
          Length = 106

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 70/97 (72%)

Query: 5   LSYLGLAMRAGKIVTGDEAVLKAVRSSEARLVVLAGDASENTQKKFRDKCGTYDIPLVIA 64
           LS LGLA+RAGK++TG+E V+KA++S +A+LV++A DAS+ T KK +DK   Y +PL I 
Sbjct: 6   LSTLGLALRAGKLITGEEQVVKAIQSGQAKLVIVAADASDGTLKKMKDKTSFYKVPLKIT 65

Query: 65  FHRDELGASIGKDQRVVLAVTDKGFAEMISRVLGDTV 101
             R  LG +IGK +RV LAV D+GFA  I   + ++V
Sbjct: 66  SDRSALGQAIGKGERVSLAVMDQGFASSIQNRIENSV 102


>Q5WFU1.1 Q5WFU1_BACSK L7AE family ribosomal protein
          Length = 102

 Score =  100 bits (248), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 66/95 (69%)

Query: 3   KALSYLGLAMRAGKIVTGDEAVLKAVRSSEARLVVLAGDASENTQKKFRDKCGTYDIPLV 62
           K LS LGL  RAG++VTG+E VL A+R  E  +V+LAGDAS NT+KK +DKCG Y IP+ 
Sbjct: 6   KLLSLLGLCQRAGQLVTGEELVLAAIRKQELSMVILAGDASSNTEKKIKDKCGYYKIPVY 65

Query: 63  IAFHRDELGASIGKDQRVVLAVTDKGFAEMISRVL 97
               R  LG +IGK+ RV + +  +GFA+ I+ +L
Sbjct: 66  QTSDRFALGQAIGKETRVAIGIRSEGFAKKIAALL 100


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 558,457,816
Number of extensions: 18443078
Number of successful extensions: 82136
Number of sequences better than 1.0e-05: 360
Number of HSP's gapped: 82096
Number of HSP's successfully gapped: 360
Length of query: 107
Length of database: 3,060,696,203
Length adjustment: 75
Effective length of query: 32
Effective length of database: 2,354,120,078
Effective search space: 75331842496
Effective search space used: 75331842496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)