BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0009.p
         (117 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIH0.1 B3KIH0_9BACI Ribosome-binding factor A                       190   3e-47
B1DM51.1 B1DM51_9BACL Ribosome-binding factor A                       167   2e-40
B4BIZ7.1 B4BIZ7_9BACI Ribosome-binding factor A                       151   2e-35
A4IMD9.1 RBFA_GEOTN Ribosome-binding factor A                         151   2e-35
Q9KA79.1 RBFA_BACHD Ribosome-binding factor A                         148   1e-34

>B3KIH0.1 B3KIH0_9BACI Ribosome-binding factor A
          Length = 117

 Score =  190 bits (483), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 102/116 (87%)

Query: 1   MSKIRAGRVGEQIKKELSQLIQSGLKDPRIGFVTVTGVDVTNDLSQAKVYLSVFGDEEQV 60
           M+KIR GRVGEQIKKELSQLIQ+ LKDPRIGF+TVTGVDVTNDLSQAKVYLSV GD+EQ 
Sbjct: 1   MAKIRTGRVGEQIKKELSQLIQTELKDPRIGFITVTGVDVTNDLSQAKVYLSVLGDDEQK 60

Query: 61  TGSLKAIEKANGFLRSELGKAIRLRHTPELIFKIDESVAYGSHIEKLLGEIGKNEE 116
             SLK +EKA+GFLRSELGK IRLRH PELIFK D+S+AYGSHIEKLL EI   EE
Sbjct: 61  AASLKGLEKASGFLRSELGKRIRLRHVPELIFKFDDSIAYGSHIEKLLTEIVDREE 116


>B1DM51.1 B1DM51_9BACL Ribosome-binding factor A
          Length = 118

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 96/113 (84%)

Query: 1   MSKIRAGRVGEQIKKELSQLIQSGLKDPRIGFVTVTGVDVTNDLSQAKVYLSVFGDEEQV 60
           M+KIR GRVGEQIKKELSQ+IQ+ LKDPRIGF+TVTGV+ T+DLSQA+VYLSV G EEQ 
Sbjct: 1   MAKIRVGRVGEQIKKELSQIIQTELKDPRIGFITVTGVEATSDLSQARVYLSVLGSEEQK 60

Query: 61  TGSLKAIEKANGFLRSELGKAIRLRHTPELIFKIDESVAYGSHIEKLLGEIGK 113
             +LKA+ KANG+LRSELGK +RLRHTPEL+FK D S+ YGS IE LL EI +
Sbjct: 61  EETLKALGKANGYLRSELGKRMRLRHTPELLFKFDSSIEYGSRIEGLLEEINR 113


>B4BIZ7.1 B4BIZ7_9BACI Ribosome-binding factor A
          Length = 128

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 90/108 (83%)

Query: 4   IRAGRVGEQIKKELSQLIQSGLKDPRIGFVTVTGVDVTNDLSQAKVYLSVFGDEEQVTGS 63
           IRA RVGEQ+KKELS +I   LKDPRIGFVTVT V VT DL QAKVY+SVFGD+EQ   +
Sbjct: 3   IRATRVGEQMKKELSDIIGRKLKDPRIGFVTVTDVRVTGDLQQAKVYISVFGDDEQRENT 62

Query: 64  LKAIEKANGFLRSELGKAIRLRHTPELIFKIDESVAYGSHIEKLLGEI 111
           LKA+EKA GF+RSE+G+ IRLR TPE++F+IDE++ YGS IE+L+ +I
Sbjct: 63  LKALEKAKGFIRSEIGQRIRLRKTPEILFEIDETIEYGSRIERLIRQI 110


>A4IMD9.1 RBFA_GEOTN Ribosome-binding factor A
          Length = 128

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 90/108 (83%)

Query: 4   IRAGRVGEQIKKELSQLIQSGLKDPRIGFVTVTGVDVTNDLSQAKVYLSVFGDEEQVTGS 63
           IRA RVGEQ+KKELS +I   LKDPRIGFVTVT V VT DL QAKVY+SVFGD+EQ   +
Sbjct: 3   IRATRVGEQMKKELSDIIGRKLKDPRIGFVTVTDVRVTGDLQQAKVYISVFGDDEQRENT 62

Query: 64  LKAIEKANGFLRSELGKAIRLRHTPELIFKIDESVAYGSHIEKLLGEI 111
           LKA+EKA GF+RSE+G+ IRLR TPE++F+IDE++ YGS IE+L+ +I
Sbjct: 63  LKALEKAKGFIRSEIGQRIRLRKTPEILFEIDETIEYGSRIERLIRQI 110


>Q9KA79.1 RBFA_BACHD Ribosome-binding factor A
          Length = 116

 Score =  148 bits (374), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 87/116 (75%)

Query: 1   MSKIRAGRVGEQIKKELSQLIQSGLKDPRIGFVTVTGVDVTNDLSQAKVYLSVFGDEEQV 60
           MS +RA RVGEQ+KKELS +    LKDPRI FVTVTGVDVT DL QA VY++V GD+EQ 
Sbjct: 1   MSNVRANRVGEQMKKELSDIFMRELKDPRIEFVTVTGVDVTGDLQQANVYITVLGDDEQK 60

Query: 61  TGSLKAIEKANGFLRSELGKAIRLRHTPELIFKIDESVAYGSHIEKLLGEIGKNEE 116
             +L  + KA GF+RSE+GK IRLR TPEL F  DES+ YG+ IEKLL +I ++ E
Sbjct: 61  EATLAGLSKAKGFIRSEIGKRIRLRKTPELFFHFDESIEYGNRIEKLLQDINRDGE 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.134    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 638,474,418
Number of extensions: 22197902
Number of successful extensions: 55553
Number of sequences better than 1.0e-05: 1241
Number of HSP's gapped: 54772
Number of HSP's successfully gapped: 1241
Length of query: 117
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 33
Effective length of database: 2,269,330,943
Effective search space: 74887921119
Effective search space used: 74887921119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)