BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0005.p
         (47 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIH4.1 B3KIH4_9BACI 30S ribosomal protein S15                        91   3e-17
B1DM47.1 B1DM47_9BACL 30S ribosomal protein S15                        90   6e-17
Q9KA82.1 RS15_BACHD 30S ribosomal protein S15                          80   9e-14
Q5WFU7.1 RS15_BACSK 30S ribosomal protein S15                          79   9e-14
B4BIZ4.1 B4BIZ4_9BACI 30S ribosomal protein S15                        79   2e-13

>B3KIH4.1 B3KIH4_9BACI 30S ribosomal protein S15
          Length = 89

 Score = 91.3 bits (225), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 47/47 (100%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKD++RYSALIEKLGLRR
Sbjct: 43 LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDVKRYSALIEKLGLRR 89


>B1DM47.1 B1DM47_9BACL 30S ribosomal protein S15
          Length = 89

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 46/47 (97%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LR HKKDHHSRRGLLKMVGQRRKLLAYLKNKD+RRYSALIEKLGLRR
Sbjct: 43 LREHKKDHHSRRGLLKMVGQRRKLLAYLKNKDVRRYSALIEKLGLRR 89


>Q9KA82.1 RS15_BACHD 30S ribosomal protein S15
          Length = 89

 Score = 79.7 bits (195), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LRTHKKDHHSRRGLLKMVGQRR LL YL+NKD+ RY  L++KLGLRR
Sbjct: 43 LRTHKKDHHSRRGLLKMVGQRRNLLTYLRNKDVTRYRNLVDKLGLRR 89


>Q5WFU7.1 RS15_BACSK 30S ribosomal protein S15
          Length = 89

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LRTHKKDHHSRRGLLKMVGQRR LL YL+NKD+ RY  L++KLGLRR
Sbjct: 43 LRTHKKDHHSRRGLLKMVGQRRNLLTYLRNKDVTRYRNLVDKLGLRR 89


>B4BIZ4.1 B4BIZ4_9BACI 30S ribosomal protein S15
          Length = 89

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LR HKKDHHSRRGLLKMVG+RR LLAYL+NKD+ RY  LIEKLGLRR
Sbjct: 43 LRVHKKDHHSRRGLLKMVGKRRNLLAYLRNKDVARYRELIEKLGLRR 89


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.142    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 250,020,268
Number of extensions: 6196384
Number of successful extensions: 19664
Number of sequences better than 1.0e-05: 1357
Number of HSP's gapped: 19658
Number of HSP's successfully gapped: 1357
Length of query: 47
Length of database: 3,060,696,203
Length adjustment: 20
Effective length of query: 27
Effective length of database: 2,872,275,903
Effective search space: 77551449381
Effective search space used: 77551449381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)