BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0001.p (150 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIH8.1 B3KIH8_9BACI Deoxyuridine 5'-triphosphate nucleotidohyd... 239 4e-62 C1TAJ3.1 C1TAJ3_9FIRM Deoxyuridine 5'-triphosphate nucleotidohyd... 189 8e-47 A8U187.1 A8U187_9PROT DUTPase 178 1e-43 P61908.1 DUT_GEOSL Deoxyuridine 5'-triphosphate nucleotidohydrol... 177 3e-43 B9M1G7.1 DUT_GEOSF Deoxyuridine 5'-triphosphate nucleotidohydrol... 176 6e-43 >B3KIH8.1 B3KIH8_9BACI Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut EC=3.6.1.23 Length = 148 Score = 239 bits (611), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 114/146 (78%), Positives = 129/146 (88%) Query: 5 YYVQINKLSGNEDVELPRKMSEQASGYDLYAAVGEAVVLAPGERTLIPTGISLAMPDGLE 64 +YVQIN+L GNEDV+LP KMSE A+G+DL+AAV E VVL PGER LIPTG ++AMP LE Sbjct: 3 HYVQINRLPGNEDVKLPVKMSELAAGFDLHAAVQEPVVLNPGERKLIPTGFAIAMPAELE 62 Query: 65 AQIRPRSGLALKHGITCLNTPGTIDADYRGEIKVLLINLGQEPFAIARNERIAQMVFQAV 124 AQIRPRSGLA KHGITCLN PGTIDADYRGE+KVLL+NLGQEPFAI RNERIAQMVF++V Sbjct: 63 AQIRPRSGLAYKHGITCLNAPGTIDADYRGEVKVLLVNLGQEPFAIERNERIAQMVFKSV 122 Query: 125 PSVTMVQVDELSETERGAGGFGHTGK 150 P+V +VDELS+T RGAGGFGHTGK Sbjct: 123 PAVEFTEVDELSDTVRGAGGFGHTGK 148 >C1TAJ3.1 C1TAJ3_9FIRM Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 Length = 148 Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 92/143 (64%), Positives = 109/143 (76%) Query: 7 VQINKLSGNEDVELPRKMSEQASGYDLYAAVGEAVVLAPGERTLIPTGISLAMPDGLEAQ 66 V++ +L + + LP MS+ ASG D+YAAV E VV PGE LIPTG+++A+P+G EAQ Sbjct: 6 VRVTRLRNAQGLSLPEYMSKGASGMDIYAAVNEPVVFLPGEIKLIPTGLAIAVPEGWEAQ 65 Query: 67 IRPRSGLALKHGITCLNTPGTIDADYRGEIKVLLINLGQEPFAIARNERIAQMVFQAVPS 126 IRPRSGLALKHGIT +N+PGTIDADYRGEIKV+L N GQ F + R +RIAQMVFQAV Sbjct: 66 IRPRSGLALKHGITVVNSPGTIDADYRGEIKVILANTGQSTFTVNRGDRIAQMVFQAVCM 125 Query: 127 VTMVQVDELSETERGAGGFGHTG 149 VD L ETERGAGGFGHTG Sbjct: 126 AQWEVVDSLDETERGAGGFGHTG 148 >A8U187.1 A8U187_9PROT DUTPase Length = 160 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 85/147 (57%), Positives = 109/147 (74%) Query: 3 LSYYVQINKLSGNEDVELPRKMSEQASGYDLYAAVGEAVVLAPGERTLIPTGISLAMPDG 62 ++ V+I +L D+ LP + A+G DL AA+GE+V LAPGERT +PTGI++A+P G Sbjct: 1 MTVSVRITRLPHGADLPLPAYETAGAAGMDLRAAIGESVTLAPGERTAVPTGIAIALPAG 60 Query: 63 LEAQIRPRSGLALKHGITCLNTPGTIDADYRGEIKVLLINLGQEPFAIARNERIAQMVFQ 122 EAQ+R RSGLA +HGI +N PGT+D+DYRGE++VLLINLGQEPF + R +RIAQMV Sbjct: 61 YEAQVRARSGLARRHGIAMVNAPGTVDSDYRGELQVLLINLGQEPFTLTRGDRIAQMVVA 120 Query: 123 AVPSVTMVQVDELSETERGAGGFGHTG 149 V + V+VD L ET RGAGGFG TG Sbjct: 121 PVARASFVEVDTLDETARGAGGFGSTG 147 >P61908.1 DUT_GEOSL Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 Length = 149 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 84/144 (58%), Positives = 105/144 (72%) Query: 7 VQINKLSGNEDVELPRKMSEQASGYDLYAAVGEAVVLAPGERTLIPTGISLAMPDGLEAQ 66 V+I ++ D+ LPR M+ A+G DL A V +VL PGER L+PTGI++A+PDG EAQ Sbjct: 6 VKIRRIRSGSDLPLPRYMTPHAAGMDLCADVDADLVLEPGERALVPTGIAIALPDGFEAQ 65 Query: 67 IRPRSGLALKHGITCLNTPGTIDADYRGEIKVLLINLGQEPFAIARNERIAQMVFQAVPS 126 IRPRSGLALKHGI +N+PGTID DYRGEI V+++N G + F + R ERIAQMVF Sbjct: 66 IRPRSGLALKHGIALVNSPGTIDPDYRGEIGVIIVNHGADAFVVRRGERIAQMVFAPFVR 125 Query: 127 VTMVQVDELSETERGAGGFGHTGK 150 ++ VDEL ET RG GGFGHTG+ Sbjct: 126 AELLDVDELDETARGDGGFGHTGR 149 >B9M1G7.1 DUT_GEOSF Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 Length = 149 Score = 176 bits (446), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 86/147 (58%), Positives = 107/147 (72%) Query: 4 SYYVQINKLSGNEDVELPRKMSEQASGYDLYAAVGEAVVLAPGERTLIPTGISLAMPDGL 63 S V+I ++ + LPR M+ A+G DL A + + +VL PGERTL+PTGI++ +P+G Sbjct: 3 SINVKIKRIRPEKGNPLPRYMTAHAAGVDLCADLDQELVLEPGERTLVPTGIAIELPEGY 62 Query: 64 EAQIRPRSGLALKHGITCLNTPGTIDADYRGEIKVLLINLGQEPFAIARNERIAQMVFQA 123 EAQIRPRSGLALKHGI+ +N+PGTIDADYRGEI V++IN G EPF I+ NERIAQMVF Sbjct: 63 EAQIRPRSGLALKHGISLVNSPGTIDADYRGEIGVIVINHGNEPFVISNNERIAQMVFAP 122 Query: 124 VPSVTMVQVDELSETERGAGGFGHTGK 150 V EL ET RG GGFGHTG+ Sbjct: 123 FTRAVFQDVAELGETARGEGGFGHTGR 149 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 875,665,034 Number of extensions: 32761499 Number of successful extensions: 90433 Number of sequences better than 1.0e-05: 1655 Number of HSP's gapped: 88979 Number of HSP's successfully gapped: 1661 Length of query: 150 Length of database: 3,060,696,203 Length adjustment: 112 Effective length of query: 38 Effective length of database: 2,005,542,523 Effective search space: 76210615874 Effective search space used: 76210615874 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)