BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0062.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D718.1 B1D718_9BACL Cellulose 1,4-beta-cellobiosidase EC=3.2.1.91 276 2e-72 B7U9C9.1 B7U9C9_9BACL Beta-1,4-endo-glucanase EC=3.2.1.4 259 3e-67 B3K8D8.1 B3K8D8_9BACI Glycoside hydrolase family 9 domain protei... 194 6e-48 A7VEC7.1 A7VEC7_9CLOT Putative uncharacterized protein 194 8e-48 B8I4R4.1 B8I4R4_CLOCE Glycoside hydrolase family 9 191 8e-47 >B1D718.1 B1D718_9BACL Cellulose 1,4-beta-cellobiosidase EC=3.2.1.91 Length = 539 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 143/284 (50%), Positives = 172/284 (60%), Gaps = 1/284 (0%) Query: 9 ITVNQIGYSTEGVKIAVINGEGQNFRVIHEETGTVVYAGKSGAAVLDKPSGAKAQTADFS 68 I VNQ+G+ K AVI GEG FR+I +ETG VV G++G A D+ SG K ADFS Sbjct: 9 IAVNQLGFRRMDRKTAVIEGEGGTFRLISQETGEVVLEGETGTAAGDRSSGRKVSRADFS 68 Query: 69 EVRTAGRYYVEGEDGAVSASFVIANKPYQELQQGLLKAFYYFRCGVELTGEYAGPWAHGP 128 V+ AG Y +E E G VS F I ++ Y+ Q LLKAFYYFRCG++L YAG W H Sbjct: 69 GVQQAGIYKLETEHGQVSDWFAIGDEGYRAAHQALLKAFYYFRCGIKLEESYAGAWKHDA 128 Query: 129 CHTAEGIVHGQPEKRLDCCGGWHDAGDYGKYSGPGAKAIXXXXXXXXXXXXXXXXXXXXX 188 CH IV+G + +D GGWHDAGDYGKY GPGAKA+ Sbjct: 129 CHLTPAIVYGDESRNVDAWGGWHDAGDYGKYVGPGAKAVADLLLAYECYPDAFARVLPLP 188 Query: 189 ESDGRTPDVLLECRVELDWLLKMQEAGTGGVYHKLTTLSFPGLDVMPEDDTAELYISPVS 248 ESDG PDVL ECR EL+W+ +MQ+A +GGV+HKLTT+ FP D MPEDDT ELY+SPVS Sbjct: 189 ESDGVMPDVLHECRYELEWMQRMQDAESGGVFHKLTTMRFPAPDTMPEDDTDELYVSPVS 248 Query: 249 AGXXXXDFAGVMAMAARVYEPYDXXXXXXXXXXXXXXWTWLEQH 292 A FA +MAMAARVY +D W WLE+H Sbjct: 249 ATATGC-FAAIMAMAARVYGRFDAGLAAGCKAAAERAWDWLERH 291 >B7U9C9.1 B7U9C9_9BACL Beta-1,4-endo-glucanase EC=3.2.1.4 Length = 542 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 134/286 (46%), Positives = 169/286 (59%), Gaps = 1/286 (0%) Query: 7 RSITVNQIGYSTEGVKIAVINGEGQNFRVIHEETGTVVYAGKSGAAVLDKPSGAKAQTAD 66 R + VNQIGY T+G K+ ++ G F + T VVY+ ++ V D SG D Sbjct: 6 RKVLVNQIGYPTKGNKLVILRGSSSAFHIRDTATSEVVYSAQTHDKVEDLCSGDHVYQGD 65 Query: 67 FSEVRTAGRYYVEGEDGAVSASFVIANKPYQELQQGLLKAFYYFRCGVELTGEYAGPWAH 126 FS G+Y +E +G VS+ F+I+ +PY E+ GL+KAFYY RCG +L EYAG W+H Sbjct: 66 FSAFEVPGQYRIEDSEGNVSSPFIISEQPYVEVHGGLMKAFYYLRCGEDLDEEYAGVWSH 125 Query: 127 GPCHTAEGIVHGQPEKRLDCCGGWHDAGDYGKYSGPGAKAIXXXXXXXXXXXXXXXXXXX 186 CHT++G VH +RLD GGWHDAGDYGKY GAKA+ Sbjct: 126 KACHTSQGSVHTNSSQRLDGNGGWHDAGDYGKYVVAGAKALVDLMLSWELYPNAFVHSIP 185 Query: 187 XXESDGRTPDVLLECRVELDWLLKMQEAGTGGVYHKLTTLSFPGLDVMPEDDTAELYISP 246 E+DG PDVL EC+VEL++LLKMQ+A TGG YHKLTT FPGLDVMPE+D AEL +P Sbjct: 186 LPETDGIMPDVLHECKVELEFLLKMQDAATGGSYHKLTTKQFPGLDVMPEEDEAELVFAP 245 Query: 247 VSAGXXXXDFAGVMAMAARVYEPYDXXXXXXXXXXXXXXWTWLEQH 292 +SA VMA+AAR+Y YD WTWLE+H Sbjct: 246 ISATATAA-SCAVMAVAARIYNTYDAEFADKCLTSAKYSWTWLEKH 290 >B3K8D8.1 B3K8D8_9BACI Glycoside hydrolase family 9 domain protein Ig domain protein Length = 223 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 99/210 (47%), Positives = 122/210 (58%) Query: 9 ITVNQIGYSTEGVKIAVINGEGQNFRVIHEETGTVVYAGKSGAAVLDKPSGAKAQTADFS 68 I VNQ+GY KIAVI G+G FR+++ G VV+ G++ A+ D SG DF+ Sbjct: 11 IAVNQLGYRGRDAKIAVIAGQGGRFRIVNARNGEVVWQGQTAPAIEDASSGQTVSRGDFT 70 Query: 69 EVRTAGRYYVEGEDGAVSASFVIANKPYQELQQGLLKAFYYFRCGVELTGEYAGPWAHGP 128 G Y +E E G S FVIA+ Y++ + +LKAFYYFRCG L +AGPW H Sbjct: 71 AWEAPGTYRIETEAGQSSVPFVIADDVYEDAHRAILKAFYYFRCGTALDEPHAGPWKHEA 130 Query: 129 CHTAEGIVHGQPEKRLDCCGGWHDAGDYGKYSGPGAKAIXXXXXXXXXXXXXXXXXXXXX 188 CH + IVHG +R+D CGGWHDAGDYGKY PGAKA Sbjct: 131 CHLTQAIVHGHESRRVDACGGWHDAGDYGKYVVPGAKAAADLLLAFELYPEAFAQPLPLP 190 Query: 189 ESDGRTPDVLLECRVELDWLLKMQEAGTGG 218 ESDGR PDVL ECR ELDWL +MQ+ +GG Sbjct: 191 ESDGRMPDVLHECRYELDWLQRMQDEESGG 220 >A7VEC7.1 A7VEC7_9CLOT Putative uncharacterized protein Length = 762 Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 118/272 (43%), Positives = 153/272 (56%), Gaps = 7/272 (2%) Query: 2 STPDLRSITVNQIGYSTEGVKIA-VINGEGQNFRVIHEETGTVVYAGK-SGAAVLDKPSG 59 +TPD +I VNQ+GY T K+A VI ++F VI +G VY+ A D PS Sbjct: 229 ATPDPMAINVNQVGYMTGDSKVATVIGKNAKSFEVIDVASGKSVYSADLPEEATYDPPSE 288 Query: 60 AKAQTADFSEVRTAGRYYVEGEDGAVSASFVIANKPYQELQQGLLKAFYYFRCGVELTGE 119 + ADFS V+ AG Y ++ +DG S F I + Y +L + ++ Y RCGVEL Sbjct: 289 MFCKQADFSSVKDAGTYKIKTDDGEESVEFKIGDDIYGDLYKDVVLMLYNQRCGVELDSS 348 Query: 120 YAGPWAHGPCHTAEGIVHGQPEKRLDCCGGWHDAGDYGKYSGPGAKAIXXXXXXXXXXXX 179 AG +AH CHT E +V+G +K++D GGWHDAGDYG+Y GAK + Sbjct: 349 IAGEFAHPACHTGEAVVYGT-DKKIDVTGGWHDAGDYGRYVVSGAKTVQDLFLTYEDNGY 407 Query: 180 XXXXXXXXXESDGRTPDVLLECRVELDWLLKMQEAGTGGVYHKLTTLSFPGLDVMPEDDT 239 +G PDVL E R ELDWLLKMQ+A GGVYHK+T FP VMPE++T Sbjct: 408 KADDIGIPESGNG-VPDVLDEARFELDWLLKMQDA-NGGVYHKVTCDVFPET-VMPEEET 464 Query: 240 AELYISPVSAGXXXXDFAGVMAMAARVYEPYD 271 A+L PVS DFA VMA A+ +Y+ YD Sbjct: 465 AQLIACPVS-NTATGDFAAVMAKASVLYKDYD 495 >B8I4R4.1 B8I4R4_CLOCE Glycoside hydrolase family 9 Length = 591 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 142/284 (50%), Gaps = 1/284 (0%) Query: 9 ITVNQIGYSTEGVKIAVINGEGQNFRVIHEETGTVVYAGKSGAAVLDKPSGAKAQTADFS 68 + VNQ+GY T KIAVI G+ + F+V+ +TG V G D+ SG ADFS Sbjct: 57 VHVNQLGYKTLSKKIAVIKGQYKKFQVVDSKTGVAVLTGDLTGNPKDESSGDTVCYADFS 116 Query: 69 EVRTAGRYYVEGEDGAVSASFVIANKPYQELQQGLLKAFYYFRCGVELTGEYAGPWAHGP 128 ++ G+Y++ S F+I + Y +L +LKA Y RCG LT ++AG ++H Sbjct: 117 KITVPGKYFISISGLGKSYDFLIDDNVYSKLGDAMLKALCYQRCGTALTPDFAGEYSHAE 176 Query: 129 CHTAEGIVHGQPEKRLDCCGGWHDAGDYGKYSGPGAKAIXXXXXXXXXXXXXXXXXXXXX 188 CH + + +D GGWHDAGDYG+Y P + Sbjct: 177 CHKTLAKFYNDETREIDVSGGWHDAGDYGRYVVPATVTVAGLLLAYEFYPQVFTDAVRIP 236 Query: 189 ESDGRTPDVLLECRVELDWLLKMQEAGTGGVYHKLTTLSFPGLDVMPEDDTAELYISPVS 248 ES + PDVL E + ++WLLKMQ++ +GGVYHK+T+ FP + MP+ D + +S Sbjct: 237 ESGNKIPDVLDEAKYGIEWLLKMQDSESGGVYHKVTSRVFPEMTTMPDKDVDNQLVMSIS 296 Query: 249 AGXXXXDFAGVMAMAARVYEPYDXXXXXXXXXXXXXXWTWLEQH 292 DFA V AMA+R+Y D W WLE++ Sbjct: 297 TN-ATADFAAVTAMASRIYVTIDPVFSQNCLQASQKAWEWLEKN 339 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,706,410,799 Number of extensions: 66721650 Number of successful extensions: 118955 Number of sequences better than 1.0e-05: 144 Number of HSP's gapped: 118540 Number of HSP's successfully gapped: 150 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)