BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0052.p (380 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZKH2.1 C0ZKH2_BREBN Putative uncharacterized protein 298 8e-79 A9VL39.1 A9VL39_BACWK Putative uncharacterized protein 250 2e-64 C3H3C1.1 C3H3C1_BACTU Putative uncharacterized protein 246 3e-63 Q638Z5.1 Q638Z5_BACCZ Putative uncharacterized protein 245 4e-63 B7JF32.1 B7JF32_BACC0 Conserved domain protein 244 1e-62 >C0ZKH2.1 C0ZKH2_BREBN Putative uncharacterized protein Length = 381 Score = 298 bits (762), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 152/377 (40%), Positives = 225/377 (59%), Gaps = 4/377 (1%) Query: 8 YDRDSARELQWPDTEYGRYARQYISAMLEHPAEHFIANVHTTVKAVVVDGLPIPITVNEN 67 Y+ SA ++ W + Y + Y+ +M+ ++ NV T + A+ V +PITVN+N Sbjct: 5 YEGTSAGQITWEQAQDADYVKSYLLSMMTEQPSRYVQNVQTRMDALRVGDRIMPITVNDN 64 Query: 68 EYANSYVCSPYTHYVSYXXXXXXXXXXXXXXXXXXVVLRGMGLLLRTARFNKVVQVNNWL 127 EY NSYV S +THYV+Y VL G+G ++ ++ NK+V VNNWL Sbjct: 65 EYDNSYVSSVFTHYVTYAKEELGMLDSAVLRQALSTVLTGLGRWMKKSQCNKMVIVNNWL 124 Query: 128 LSTNLYPPVSPDQLLKVIDFLRSEFPGYTVLLRSLSKETSGALLEALDGYGCKWVPSRQI 187 LSTNLY VS +++ + + +FP + + RS+ + + L G VPSR + Sbjct: 125 LSTNLYHDVSAEEVKDITESCIQKFPSHIIAFRSVCRRLYPDFHKGLVEKGYLMVPSRYV 184 Query: 188 YLLQHPAGSKAKWLVK----RDRALLDKHGYTVDPPGQITEEDIPRIVELYELLYIHKYS 243 YL ++ KW V+ RDR +L K GY + ++ E+ + RIV LY LY+ KYS Sbjct: 185 YLFHPDWPAQGKWRVRNTLNRDRKMLAKSGYRILRHEELGEQHVERIVALYNALYLDKYS 244 Query: 244 KHNPQFTEAYIRLALEKRTLYIYGLRKNGRLDAVLGFYSREGAMTAPLFGYDTSLPQPLG 303 +HNPQF+ ++RLA++KRTL + GL K+G+LD +LG++ R G MT PLFGYDT+LP+ G Sbjct: 245 RHNPQFSVEFVRLAMQKRTLTLIGLEKDGQLDGILGYFERNGVMTTPLFGYDTTLPKETG 304 Query: 304 LYRMLSAVLIDLAGSRGELLHESSGVGQFKRNRGAVGATELSAVFDQGTSWLNRCSWSFL 363 LYRMLS +L+ A +G LLH+S+GVG FK +RGA G E +AV+ + + R W L Sbjct: 305 LYRMLSCLLVQEAQCKGILLHQSAGVGAFKADRGAEGEPEFTAVYVKHLPFYRRAVWKVL 364 Query: 364 GWLLRRVGIPLIQKLKL 380 LL ++GI L++K +L Sbjct: 365 AVLLNQIGIKLVEKYRL 381 >A9VL39.1 A9VL39_BACWK Putative uncharacterized protein Length = 381 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 139/378 (36%), Positives = 204/378 (53%), Gaps = 6/378 (1%) Query: 5 VYLYDRDSARELQWPDTEYGRYARQYISAMLEHPAEHFIANVHTTVKAVVVDGLPIPITV 64 + L+D S + W + G Y R + + FI NV+T + + +D L +P+T+ Sbjct: 2 IQLHDVHSLHSIDWESKKDGAYVRDSFLPLFQKGVTAFIENVNTQLFLLEIDDLILPVTL 61 Query: 65 NENEYANSYVCSPYTHYVSYXXXXXXXXXXXXXXXXXXVVLRGMGLLLRTARFNKVVQVN 124 N E+ NSYVCSPYTHYVSY + MG LR NKV+ VN Sbjct: 62 NNAEFENSYVCSPYTHYVSYALEELWELKKPWLEKLLTYPIHLMGSWLRRTNINKVIVVN 121 Query: 125 NWLLSTNLYPPVSPDQLLKVIDFLRSEFPGYTVLLRSLSKETSGALLEALDGYGCKWVPS 184 NW+LSTNLY ++ Q+ ++ + +FP +T+L+RSL+ E EAL G K + S Sbjct: 122 NWMLSTNLYHSINERQIEQITNLFVEKFPEHTILIRSLNNELYPVTTEALSTVGYKKIMS 181 Query: 185 RQIYLLQHPAGSKAKWLVKR-----DRALLDKHGYTVDPPGQITEEDIPRIVELYELLYI 239 R IYL P K KR D++LL+K Y + ++T+EDI +I +LY LYI Sbjct: 182 RSIYLFD-PKHYKKMNRKKRKDLLNDKSLLEKSNYEIIANEELTKEDILQISQLYNQLYI 240 Query: 240 HKYSKHNPQFTEAYIRLALEKRTLYIYGLRKNGRLDAVLGFYSREGAMTAPLFGYDTSLP 299 KYS HNP FT AY+ AL+ R I ++K +D V+ ++ R+G MT P+ GY+T+ Sbjct: 241 EKYSAHNPMFTPAYLWNALQHRLFEIKAIKKGDTIDGVIAYFIRDGVMTTPILGYNTNSD 300 Query: 300 QPLGLYRMLSAVLIDLAGSRGELLHESSGVGQFKRNRGAVGATELSAVFDQGTSWLNRCS 359 Q GLYR+LS ++ + + + H S+G G+FKRNRGA+ E S V++ + Sbjct: 301 QQQGLYRILSLLITMDSIEKDLICHCSAGAGEFKRNRGAIQQIEYSYVYNAHLPPSQQRV 360 Query: 360 WSFLGWLLRRVGIPLIQK 377 W L W+L P+ +K Sbjct: 361 WKVLMWILNTYIEPMAKK 378 >C3H3C1.1 C3H3C1_BACTU Putative uncharacterized protein Length = 378 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 138/376 (36%), Positives = 201/376 (53%), Gaps = 6/376 (1%) Query: 7 LYDRDSARELQWPDTEYGRYARQYISAMLEHPAEHFIANVHTTVKAVVVDGLPIPITVNE 66 ++D S + W + G Y R + + FI NV+T + + +D L +P+T+N Sbjct: 1 MHDVRSLHSIDWESKKDGAYVRDSFLPLFQKGVTVFIENVNTQLFLLEIDDLILPVTLNN 60 Query: 67 NEYANSYVCSPYTHYVSYXXXXXXXXXXXXXXXXXXVVLRGMGLLLRTARFNKVVQVNNW 126 E+ NSYVCSPYTHYVSY + MG LR NKV+ VNNW Sbjct: 61 AEFENSYVCSPYTHYVSYALEELWELKKPWLEKLLTYPIYLMGSWLRRTNLNKVIVVNNW 120 Query: 127 LLSTNLYPPVSPDQLLKVIDFLRSEFPGYTVLLRSLSKETSGALLEALDGYGCKWVPSRQ 186 +LSTNLY ++ Q+ ++ + +FP +T+L RSL+ E EAL G K + SR Sbjct: 121 MLSTNLYHSINEQQIEQITNLFVEKFPEHTILFRSLNNELYPVTTEALSTVGYKKIMSRS 180 Query: 187 IYLLQHPAGSKAKWLVKR-----DRALLDKHGYTVDPPGQITEEDIPRIVELYELLYIHK 241 IYL P K KR D++LL+K Y + ++T+EDI +I +LY LYI K Sbjct: 181 IYLFD-PKHYKKMNRKKRKDLLNDKSLLEKSNYEIITNEELTKEDILQISQLYNQLYIEK 239 Query: 242 YSKHNPQFTEAYIRLALEKRTLYIYGLRKNGRLDAVLGFYSREGAMTAPLFGYDTSLPQP 301 YS HNP FT AY+ AL+ R I ++K +D V+ ++ R+G MT P+ GY+T+ Q Sbjct: 240 YSAHNPMFTPAYLWNALQHRLFEIKAIKKGDTIDGVIAYFIRDGVMTTPILGYNTNSDQQ 299 Query: 302 LGLYRMLSAVLIDLAGSRGELLHESSGVGQFKRNRGAVGATELSAVFDQGTSWLNRCSWS 361 GLYR+LS ++ + + + H S+G G+FKRNRGA E S V++ + W Sbjct: 300 QGLYRILSLLITMDSIEKDLICHCSAGAGEFKRNRGATQQIEYSYVYNAHLPPSQQRVWK 359 Query: 362 FLGWLLRRVGIPLIQK 377 L W+L P+ +K Sbjct: 360 VLMWILNTYIEPMAKK 375 >Q638Z5.1 Q638Z5_BACCZ Putative uncharacterized protein Length = 381 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 200/378 (52%), Gaps = 6/378 (1%) Query: 5 VYLYDRDSARELQWPDTEYGRYARQYISAMLEHPAEHFIANVHTTVKAVVVDGLPIPITV 64 + L+D S + W + G Y R + FI NV+T + + VD L +P+T+ Sbjct: 2 IQLHDVHSLHSIDWESKKDGAYVRDSFLPFFQKGVTAFIENVNTQLFLLEVDDLILPVTL 61 Query: 65 NENEYANSYVCSPYTHYVSYXXXXXXXXXXXXXXXXXXVVLRGMGLLLRTARFNKVVQVN 124 N E+ NSYVCSPYTHY+SY + MG LR NKV+ VN Sbjct: 62 NNAEFENSYVCSPYTHYISYALEELWELKKLWLEKLLTYPIHLMGNWLRRTNINKVIVVN 121 Query: 125 NWLLSTNLYPPVSPDQLLKVIDFLRSEFPGYTVLLRSLSKETSGALLEALDGYGCKWVPS 184 NW+LSTNLY ++ Q+ ++ L +FP +T+L RSL+ + A EAL G + S Sbjct: 122 NWMLSTNLYHSINEQQIEQITKVLVEKFPEHTILFRSLNNKLYPATTEALSTVGYNKIMS 181 Query: 185 RQIYLLQHPAGSKAKWLVKR-----DRALLDKHGYTVDPPGQITEEDIPRIVELYELLYI 239 R IYL P K KR D++LL+K Y + ++T++DI +I +LY LYI Sbjct: 182 RSIYLFD-PKHYKKMNRKKRKDLLNDKSLLEKSNYEIITNEELTKDDILQISQLYNQLYI 240 Query: 240 HKYSKHNPQFTEAYIRLALEKRTLYIYGLRKNGRLDAVLGFYSREGAMTAPLFGYDTSLP 299 KYS HNP FT AY+ AL+ R I ++K +D V+ ++ R+G MT P+ GY T+ Sbjct: 241 EKYSAHNPMFTPAYLWNALQHRLFEIKAIKKGDTIDGVIAYFIRDGVMTTPILGYHTNSD 300 Query: 300 QPLGLYRMLSAVLIDLAGSRGELLHESSGVGQFKRNRGAVGATELSAVFDQGTSWLNRCS 359 Q GLYR+LS ++ + + + H S+G G+FKRNRGA E S V++ + Sbjct: 301 QQQGLYRILSLLITMDSIEKDLICHCSAGAGEFKRNRGATQQIEYSYVYNAHLPPSQQKV 360 Query: 360 WSFLGWLLRRVGIPLIQK 377 W L W+L P+ +K Sbjct: 361 WKVLMWILNTYIEPMAKK 378 >B7JF32.1 B7JF32_BACC0 Conserved domain protein Length = 381 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 200/378 (52%), Gaps = 6/378 (1%) Query: 5 VYLYDRDSARELQWPDTEYGRYARQYISAMLEHPAEHFIANVHTTVKAVVVDGLPIPITV 64 + L+D S + W + G Y R + FI NV+T + + VD L +P+T+ Sbjct: 2 IQLHDVHSLHSIDWESKKDGAYVRDSFLPFFQKGVTAFIENVNTQLFLLEVDDLILPVTL 61 Query: 65 NENEYANSYVCSPYTHYVSYXXXXXXXXXXXXXXXXXXVVLRGMGLLLRTARFNKVVQVN 124 N E+ NSYVCSPYTHY+SY + MG LR NKV+ VN Sbjct: 62 NNAEFENSYVCSPYTHYISYALEELWELKKPWLEKLLTYPIHLMGNWLRRTNINKVIVVN 121 Query: 125 NWLLSTNLYPPVSPDQLLKVIDFLRSEFPGYTVLLRSLSKETSGALLEALDGYGCKWVPS 184 NW+LSTNLY ++ Q+ ++ L +FP +T+L RSL+ + A EAL G + S Sbjct: 122 NWMLSTNLYHSINEQQIEQITKVLVEKFPEHTILFRSLNNKLYPATTEALSTVGYNKIMS 181 Query: 185 RQIYLLQHPAGSKAKWLVKR-----DRALLDKHGYTVDPPGQITEEDIPRIVELYELLYI 239 R IYL P K KR D++LL+K Y + ++T++DI +I +LY LYI Sbjct: 182 RSIYLFD-PKHYKKMNRKKRKDLLNDKSLLEKSNYEIITNEELTKDDILQISQLYNQLYI 240 Query: 240 HKYSKHNPQFTEAYIRLALEKRTLYIYGLRKNGRLDAVLGFYSREGAMTAPLFGYDTSLP 299 KYS HNP FT AY+ AL+ R I ++K +D V+ ++ R+G MT P+ GY T+ Sbjct: 241 EKYSAHNPMFTPAYLWNALQHRLFEIKAIKKGDTIDGVIAYFIRDGVMTTPILGYHTNSD 300 Query: 300 QPLGLYRMLSAVLIDLAGSRGELLHESSGVGQFKRNRGAVGATELSAVFDQGTSWLNRCS 359 Q GLYR+LS ++ + + + H S+G G+FKRNRGA E S V++ + Sbjct: 301 QQQGLYRILSLLITMDSIEKDLICHCSAGAGEFKRNRGATQQIEYSYVYNAHLPPSQQKV 360 Query: 360 WSFLGWLLRRVGIPLIQK 377 W L W+L P+ +K Sbjct: 361 WKVLMWILNTYIEPMAKK 378 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,302,061,077 Number of extensions: 94366598 Number of successful extensions: 192657 Number of sequences better than 1.0e-05: 61 Number of HSP's gapped: 192526 Number of HSP's successfully gapped: 61 Length of query: 380 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 243 Effective length of database: 1,770,017,148 Effective search space: 430114166964 Effective search space used: 430114166964 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)