BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0046.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZKH7.1 C0ZKH7_BREBN Putative 3-oxoacyl-[acyl-carrier-protein] ... 174 5e-42 Q81JE9.1 Q81JE9_BACAN 3-oxoacyl-(Acyl-carrier-protein) synthase ... 169 2e-40 C3P1V5.1 C3P1V5_BACAA Putative 3-oxoacyl-(Acyl-carrier-protein) ... 169 2e-40 C3LCN4.1 C3LCN4_BACAC Putative 3-oxoacyl-(Acyl-carrier-protein) ... 169 2e-40 B7JF37.1 B7JF37_BACC0 Putative 3-oxoacyl-(Acyl-carrier-protein) ... 169 2e-40 >C0ZKH7.1 C0ZKH7_BREBN Putative 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 331 Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 87/166 (52%), Positives = 111/166 (66%), Gaps = 1/166 (0%) Query: 4 RHVKILGTGKYLPSRKVTDEELDTLLGTPAGWVNKITGVGVRHYAGGGETASTMGXXXXX 63 R +KILGTGKYLP+R+VT EL+ LG AGWV K +GV VRH+ ETA+ MG Sbjct: 3 RKIKILGTGKYLPTRRVTAAELEEKLGLAAGWVEKKSGVSVRHFVTN-ETAAQMGAIAAR 61 Query: 64 XXXXXXXXXXXDIDCLVCTSGTKEQPLPSTAVFIQQAMGQENSGVPAFDIDSTCLSFLVG 123 +IDC+VC SGT +Q +P TA IQ+ + SG+P FDI++TCLSF+ Sbjct: 62 RALEAAGLSLHEIDCIVCASGTAQQEIPCTAALIQEELQLSKSGIPCFDINATCLSFVTA 121 Query: 124 LDVMSYMVEAGRYRNVLLVASEIASAGLDYEDKESAALFGDGAAAV 169 LDVMS + G Y VL+++SEI+SAGL++E KES LFGDGAAAV Sbjct: 122 LDVMSCQMAVGIYERVLIISSEISSAGLNWEQKESCVLFGDGAAAV 167 >Q81JE9.1 Q81JE9_BACAN 3-oxoacyl-(Acyl-carrier-protein) synthase III, putative Length = 329 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/166 (48%), Positives = 110/166 (66%), Gaps = 1/166 (0%) Query: 4 RHVKILGTGKYLPSRKVTDEELDTLLGTPAGWVNKITGVGVRHYAGGGETASTMGXXXXX 63 R++ I G G YLP RKV E+D +L P GW K GV R++ G ET+S MG Sbjct: 3 RYISIKGIGTYLPKRKVDSLEIDQMLDVPEGWTLKKAGVKTRYFVDG-ETSSYMGAEAAK 61 Query: 64 XXXXXXXXXXXDIDCLVCTSGTKEQPLPSTAVFIQQAMGQENSGVPAFDIDSTCLSFLVG 123 DIDC++C SGT +Q +PSTA IQ+ +G ++SG+P FDI+STCLSF+ Sbjct: 62 KAVEDAKLTWDDIDCIICGSGTIQQAIPSTASLIQEQLGLQHSGIPCFDINSTCLSFITA 121 Query: 124 LDVMSYMVEAGRYRNVLLVASEIASAGLDYEDKESAALFGDGAAAV 169 LD +SY +E GRY+NV++++SEI+S GL++ ES+ LFGDGAAAV Sbjct: 122 LDTISYAIECGRYKNVVIISSEISSVGLNWGQNESSILFGDGAAAV 167 >C3P1V5.1 C3P1V5_BACAA Putative 3-oxoacyl-(Acyl-carrier-protein) synthase III Length = 329 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/166 (48%), Positives = 110/166 (66%), Gaps = 1/166 (0%) Query: 4 RHVKILGTGKYLPSRKVTDEELDTLLGTPAGWVNKITGVGVRHYAGGGETASTMGXXXXX 63 R++ I G G YLP RKV E+D +L P GW K GV R++ G ET+S MG Sbjct: 3 RYISIKGIGTYLPKRKVDSLEIDQMLDVPEGWTLKKAGVKTRYFVDG-ETSSYMGAEAAK 61 Query: 64 XXXXXXXXXXXDIDCLVCTSGTKEQPLPSTAVFIQQAMGQENSGVPAFDIDSTCLSFLVG 123 DIDC++C SGT +Q +PSTA IQ+ +G ++SG+P FDI+STCLSF+ Sbjct: 62 KAVEDAKLTWDDIDCIICGSGTIQQAIPSTASLIQEQLGLQHSGIPCFDINSTCLSFITA 121 Query: 124 LDVMSYMVEAGRYRNVLLVASEIASAGLDYEDKESAALFGDGAAAV 169 LD +SY +E GRY+NV++++SEI+S GL++ ES+ LFGDGAAAV Sbjct: 122 LDTISYAIECGRYKNVVIISSEISSVGLNWGQNESSILFGDGAAAV 167 >C3LCN4.1 C3LCN4_BACAC Putative 3-oxoacyl-(Acyl-carrier-protein) synthase III Length = 329 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/166 (48%), Positives = 110/166 (66%), Gaps = 1/166 (0%) Query: 4 RHVKILGTGKYLPSRKVTDEELDTLLGTPAGWVNKITGVGVRHYAGGGETASTMGXXXXX 63 R++ I G G YLP RKV E+D +L P GW K GV R++ G ET+S MG Sbjct: 3 RYISIKGIGTYLPKRKVDSLEIDQMLDVPEGWTLKKAGVKTRYFVDG-ETSSYMGAEAAK 61 Query: 64 XXXXXXXXXXXDIDCLVCTSGTKEQPLPSTAVFIQQAMGQENSGVPAFDIDSTCLSFLVG 123 DIDC++C SGT +Q +PSTA IQ+ +G ++SG+P FDI+STCLSF+ Sbjct: 62 KAVEDAKLTWDDIDCIICGSGTIQQAIPSTASLIQEQLGLQHSGIPCFDINSTCLSFITA 121 Query: 124 LDVMSYMVEAGRYRNVLLVASEIASAGLDYEDKESAALFGDGAAAV 169 LD +SY +E GRY+NV++++SEI+S GL++ ES+ LFGDGAAAV Sbjct: 122 LDTISYAIECGRYKNVVIISSEISSVGLNWGQNESSILFGDGAAAV 167 >B7JF37.1 B7JF37_BACC0 Putative 3-oxoacyl-(Acyl-carrier-protein) synthase III Length = 329 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/166 (48%), Positives = 110/166 (66%), Gaps = 1/166 (0%) Query: 4 RHVKILGTGKYLPSRKVTDEELDTLLGTPAGWVNKITGVGVRHYAGGGETASTMGXXXXX 63 R++ I G G YLP RKV E+D +L P GW K GV R++ G ET+S MG Sbjct: 3 RYISIKGIGTYLPKRKVDSLEIDQMLDVPEGWTLKKAGVKTRYFVDG-ETSSYMGAEAAK 61 Query: 64 XXXXXXXXXXXDIDCLVCTSGTKEQPLPSTAVFIQQAMGQENSGVPAFDIDSTCLSFLVG 123 DIDC++C SGT +Q +PSTA IQ+ +G ++SG+P FDI+STCLSF+ Sbjct: 62 KAVEDAKLTWDDIDCIICGSGTIQQAIPSTASLIQEQLGLQHSGIPCFDINSTCLSFITA 121 Query: 124 LDVMSYMVEAGRYRNVLLVASEIASAGLDYEDKESAALFGDGAAAV 169 LD +SY +E GRY+NV++++SEI+S GL++ ES+ LFGDGAAAV Sbjct: 122 LDTISYAIECGRYKNVVIISSEISSVGLNWGQNESSILFGDGAAAV 167 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,613,040,514 Number of extensions: 62222496 Number of successful extensions: 118308 Number of sequences better than 1.0e-05: 1970 Number of HSP's gapped: 115761 Number of HSP's successfully gapped: 1970 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)