BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0044.p (265 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGU0.1 B3KGU0_9BACI Putative membrane protein 352 2e-95 C2VT67.1 C2VT67_BACCE Putative uncharacterized protein 229 2e-58 Q6HJE4.1 Q6HJE4_BACHK Possible membrane protein 229 2e-58 C3HHA0.1 C3HHA0_BACTU Putative uncharacterized protein 227 7e-58 A0RDK1.1 A0RDK1_BACAH Possible membrane protein 227 8e-58 >B3KGU0.1 B3KGU0_9BACI Putative membrane protein Length = 263 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 180/265 (67%), Positives = 213/265 (80%), Gaps = 2/265 (0%) Query: 1 MTNSLIVVCILTMIIHTAETLSYSVRFAGVKLNKIAIALSLTGIIVLVSRTANMVQAPLT 60 M SLIVV +LTMIIHTAETLSYS R+AGVKLNKIA+ALSLTGIIVLVSRT+N+VQAPLT Sbjct: 1 MIQSLIVVFVLTMIIHTAETLSYSARYAGVKLNKIAVALSLTGIIVLVSRTSNLVQAPLT 60 Query: 61 AKFVDYAKTHHTFPLDNYLRIIMLASSLGTLIAIALFPSFVGLCGRIISKLEIEGSIPKL 120 KFVDYAK +F + +Y R I+LA+S+GT++AIALFP+FV L RIISKLE+ GSIPKL Sbjct: 61 GKFVDYAKVDPSFDVLSYFRAILLAASIGTIVAIALFPTFVNLFSRIISKLEVAGSIPKL 120 Query: 121 LTSVTIGQLKNTRKYFRKPRVMLHSFRYLGIPKRFIIMNIFVTAFYTVGVLSSLLAAXXX 180 ++SVTIGQLKNTR Y RKP + FRYLG+PKRFI++NI VTAFYTVGVL+SL AA Sbjct: 121 VSSVTIGQLKNTRHYIRKPNLKWSQFRYLGVPKRFILLNIVVTAFYTVGVLASLYAA--H 178 Query: 181 XVPALSTTASQASGLINGLATIMLTIFIDPQLGIITHKAIENADSRDQLGKIYVLLMGSR 240 VP ST ASQASGLING+ATI+LTIFIDPQLG+IT KA N ++R+QLGK+Y +LM SR Sbjct: 179 LVPQYSTMASQASGLINGIATIILTIFIDPQLGLITDKATRNEEAREQLGKVYTMLMVSR 238 Query: 241 FXXXXXXXXXXXPAAHVIIWLVQLI 265 F PAA+VI +V+ I Sbjct: 239 FFGTMLAQLVIIPAAYVISEIVKWI 263 >C2VT67.1 C2VT67_BACCE Putative uncharacterized protein Length = 268 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 114/266 (42%), Positives = 179/266 (67%), Gaps = 3/266 (1%) Query: 1 MTNSLIVVCILTMIIHTAETLSYSVRFAGVKLNKIAIALSLTGIIVLVSRTANMVQAPLT 60 M +LI + T++IH ET SYS+R AGV+L KIA+ALS+ GI++L+SRT+N++QA L Sbjct: 4 MAITLIFIMAFTIVIHAVETSSYSIRLAGVRLKKIAVALSVVGIVLLISRTSNLLQAFLL 63 Query: 61 AKFVDYAKTHHTFPLDNYLRIIMLASSLGTLIAIALFPSFVGLCGRIISKLEIEGSIPKL 120 VD AK + L+N +R+++L++S+GTL+AI L+P+ L G +I E +GS ++ Sbjct: 64 GGIVDEAKLDSSIDLENIMRLVLLSASVGTLLAIILYPTLTKLFGYVIQNFETDGSFIRM 123 Query: 121 LTSVTIGQLKNTRKYFRKPRV-MLHSFRYLGIPKRFIIMNIFVTAFYTVGVLSSLLAAXX 179 + + I +LK T+KY R P+ M+H R GIPKR +++N+F TA YT GVLS+L A+ Sbjct: 124 MKTNNIQKLKYTKKYVRFPKFEMIHRLRIGGIPKRIMLINMFATAIYTAGVLSALYAS-- 181 Query: 180 XXVPALSTTASQASGLINGLATIMLTIFIDPQLGIITHKAIENADSRDQLGKIYVLLMGS 239 +PA +T A+ ASGLING ATI+LT+ +DP++ ++T +A+++ +S + + K+Y LM S Sbjct: 182 FLIPAFATKATTASGLINGFATILLTVLLDPRIALLTERALQSEESAEAMSKMYAWLMIS 241 Query: 240 RFXXXXXXXXXXXPAAHVIIWLVQLI 265 R P A+ I W+++L+ Sbjct: 242 RLFGTLLAQLLFIPGAYWITWIIKLM 267 >Q6HJE4.1 Q6HJE4_BACHK Possible membrane protein Length = 265 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 114/266 (42%), Positives = 179/266 (67%), Gaps = 3/266 (1%) Query: 1 MTNSLIVVCILTMIIHTAETLSYSVRFAGVKLNKIAIALSLTGIIVLVSRTANMVQAPLT 60 M +LI + T++IH ET SYS+R AGV+L KIA+ALS+ GI++L+SRT+N++QA L Sbjct: 1 MAITLIFIMAFTIVIHAVETSSYSIRLAGVRLKKIAVALSVVGIVLLISRTSNLLQAFLL 60 Query: 61 AKFVDYAKTHHTFPLDNYLRIIMLASSLGTLIAIALFPSFVGLCGRIISKLEIEGSIPKL 120 VD AK + L+N +R+++L++S+GTL+AI L+P+ L G +I E +GS ++ Sbjct: 61 GGIVDEAKLDSSIDLENIMRLVLLSASVGTLLAIILYPTLTKLFGYVIQNFETDGSFIRM 120 Query: 121 LTSVTIGQLKNTRKYFRKPRV-MLHSFRYLGIPKRFIIMNIFVTAFYTVGVLSSLLAAXX 179 + + I +LK T+KY R P+ M+H R GIPKR +++N+F TA YT GVLS+L A+ Sbjct: 121 MKTNNIQKLKYTKKYVRFPKFEMIHRLRIGGIPKRIMLINMFATAIYTAGVLSALYAS-- 178 Query: 180 XXVPALSTTASQASGLINGLATIMLTIFIDPQLGIITHKAIENADSRDQLGKIYVLLMGS 239 +PA +T A+ ASGLING ATI+LT+ +DP++ ++T +A+++ +S + + K+Y LM S Sbjct: 179 FLIPAFATKATTASGLINGFATILLTVLLDPRIALLTERALQSEESAEAMSKMYAWLMIS 238 Query: 240 RFXXXXXXXXXXXPAAHVIIWLVQLI 265 R P A+ I W+++L+ Sbjct: 239 RLFGTLLAQLLFIPGAYWITWIIKLM 264 >C3HHA0.1 C3HHA0_BACTU Putative uncharacterized protein Length = 268 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 114/266 (42%), Positives = 178/266 (66%), Gaps = 3/266 (1%) Query: 1 MTNSLIVVCILTMIIHTAETLSYSVRFAGVKLNKIAIALSLTGIIVLVSRTANMVQAPLT 60 M +LI + T++IH ET SYS+R AGV+L KIA+ALS+ GI++L+SRT+N++QA L Sbjct: 4 MAITLIFIMAFTIVIHAVETSSYSIRLAGVRLKKIAVALSVVGIVLLISRTSNLLQAFLL 63 Query: 61 AKFVDYAKTHHTFPLDNYLRIIMLASSLGTLIAIALFPSFVGLCGRIISKLEIEGSIPKL 120 VD AK + L+N +R+++L++S+GTL+AI L+P+ L G +I E +GS ++ Sbjct: 64 GGIVDEAKLDSSIDLENIMRLVLLSASVGTLLAIILYPTLTKLFGYVIQNFETDGSFIRM 123 Query: 121 LTSVTIGQLKNTRKYFRKPRV-MLHSFRYLGIPKRFIIMNIFVTAFYTVGVLSSLLAAXX 179 + + I +LK T+KY R P+ M+H R GIPKR +++NIF TA YT GVLS+L A+ Sbjct: 124 MKTNNIQKLKYTKKYVRFPKFEMIHRLRIGGIPKRIMVINIFSTAIYTAGVLSALYAS-- 181 Query: 180 XXVPALSTTASQASGLINGLATIMLTIFIDPQLGIITHKAIENADSRDQLGKIYVLLMGS 239 +PA +T A+ ASGLING ATI+LT+ +DP++ ++T +A+++ + + + K+Y LM S Sbjct: 182 FLIPAFATKATTASGLINGFATILLTVLLDPRIALLTERALQSEEGAEAMSKMYAWLMIS 241 Query: 240 RFXXXXXXXXXXXPAAHVIIWLVQLI 265 R P A+ I W+++L+ Sbjct: 242 RLFGTLLAQLLFIPGAYWIKWIIKLM 267 >A0RDK1.1 A0RDK1_BACAH Possible membrane protein Length = 268 Score = 227 bits (578), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 114/266 (42%), Positives = 178/266 (66%), Gaps = 3/266 (1%) Query: 1 MTNSLIVVCILTMIIHTAETLSYSVRFAGVKLNKIAIALSLTGIIVLVSRTANMVQAPLT 60 M +LI + T++IH ET SYS+R AGV+L KIA+ALS+ GI++L+SRT+N++QA L Sbjct: 4 MAITLIFIMAFTIVIHAVETSSYSIRLAGVRLKKIAVALSVVGIVLLISRTSNLLQAFLL 63 Query: 61 AKFVDYAKTHHTFPLDNYLRIIMLASSLGTLIAIALFPSFVGLCGRIISKLEIEGSIPKL 120 VD AK + L+N +R+++L++S+GTL+AI L+P+ L G II E +GS ++ Sbjct: 64 GGIVDEAKLDSSIDLENIMRLVLLSASVGTLLAIILYPTLTKLFGYIIQNFETDGSFIRM 123 Query: 121 LTSVTIGQLKNTRKYFRKPRV-MLHSFRYLGIPKRFIIMNIFVTAFYTVGVLSSLLAAXX 179 + + I +LK T+KY R P+ M+H R GIPKR +++N+F TA YT GVLS+L A+ Sbjct: 124 MKTNNIQKLKYTKKYVRFPKFEMIHRLRIGGIPKRIMVINMFSTAIYTAGVLSALYAS-- 181 Query: 180 XXVPALSTTASQASGLINGLATIMLTIFIDPQLGIITHKAIENADSRDQLGKIYVLLMGS 239 +PA +T A+ ASGLING ATI+LT+ +DP++ ++T +A+++ + + + K+Y LM S Sbjct: 182 FLIPAFATKATTASGLINGFATILLTVLLDPRIALLTERALQSEEGAEAMSKMYAWLMIS 241 Query: 240 RFXXXXXXXXXXXPAAHVIIWLVQLI 265 R P A+ I W+++L+ Sbjct: 242 RLFGTLLAQLLFIPGAYWIKWIIKLM 267 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,214,289,423 Number of extensions: 41523316 Number of successful extensions: 130331 Number of sequences better than 1.0e-05: 138 Number of HSP's gapped: 130032 Number of HSP's successfully gapped: 138 Length of query: 265 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 132 Effective length of database: 1,807,701,208 Effective search space: 238616559456 Effective search space used: 238616559456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)