BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0042.p (157 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2MLM3.1 C2MLM3_BACCE MutT/Nudix 166 4e-40 C3BKX4.1 C3BKX4_9BACI MutT/Nudix 166 5e-40 C3AWS6.1 C3AWS6_BACMY MutT/Nudix 166 5e-40 Q81PP6.1 Q81PP6_BACAN MutT/nudix family protein 165 1e-39 C3PC97.1 C3PC97_BACAA MutT/NUDIX family protein 165 1e-39 >C2MLM3.1 C2MLM3_BACCE MutT/Nudix Length = 153 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 83/145 (57%), Positives = 106/145 (73%), Gaps = 1/145 (0%) Query: 1 MPISEYYRSLRNKVGSGLLMVPSVAAVIRNEEGDILLLRKGGEQLWGLPAGAIEPGETPS 60 M IS YY+ +R ++G L+++PSVAAVI+NE+G IL GGE W LPAGAIEPGETP Sbjct: 9 MSISLYYKKIREQLGHELILIPSVAAVIKNEQGKILFQYPGGE-YWSLPAGAIEPGETPE 67 Query: 61 RALRREVFEETGLMVNPLRIIGVFGGEKYTYEYINGDRVQYSVIVFECAIVKGTLRSVDG 120 A+ REV+EETGL V + GVFGGE+Y + Y NGD+V+Y V+VFEC I G L+S+DG Sbjct: 68 EAVVREVWEETGLKVQVKKQKGVFGGEEYRHTYPNGDQVEYIVVVFECEITSGKLKSIDG 127 Query: 121 EAEELVFFSGDELPELAIPYPPEIF 145 E+ +L +FS E P LA+PYP IF Sbjct: 128 ESLKLQYFSLSEKPSLALPYPNNIF 152 >C3BKX4.1 C3BKX4_9BACI MutT/Nudix Length = 145 Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 83/145 (57%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 1 MPISEYYRSLRNKVGSGLLMVPSVAAVIRNEEGDILLLRKGGEQLWGLPAGAIEPGETPS 60 M IS YY+ +R KVGS L+ +PSVAA+I+NE+G+IL GGE W LPAGAIEPGETP Sbjct: 1 MAISTYYKQIREKVGSDLIFMPSVAAIIKNEQGEILFQYPGGE-FWSLPAGAIEPGETPE 59 Query: 61 RALRREVFEETGLMVNPLRIIGVFGGEKYTYEYINGDRVQYSVIVFECAIVKGTLRSVDG 120 A+ REV+EETGL V I G+FGG+ + + Y NGD+V+Y V+VFEC V G LR++D Sbjct: 60 EAVVREVWEETGLRVQVKEIKGIFGGKDFRHTYSNGDQVEYIVVVFECEGVGGELRAIDE 119 Query: 121 EAEELVFFSGDELPELAIPYPPEIF 145 E+ +L +FS E P+LA+PYP EIF Sbjct: 120 ESLKLQYFSSQERPKLALPYPEEIF 144 >C3AWS6.1 C3AWS6_BACMY MutT/Nudix Length = 145 Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 84/145 (57%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 1 MPISEYYRSLRNKVGSGLLMVPSVAAVIRNEEGDILLLRKGGEQLWGLPAGAIEPGETPS 60 M IS YY+ +R KVGSGL+ +PSVAA+I+NE G+IL GGE W LPAGAIEPGETP Sbjct: 1 MSISTYYKKIREKVGSGLIFMPSVAAIIKNELGEILFQYPGGE-YWSLPAGAIEPGETPE 59 Query: 61 RALRREVFEETGLMVNPLRIIGVFGGEKYTYEYINGDRVQYSVIVFECAIVKGTLRSVDG 120 A+ REV+EETGL V I G+FGG+ + + Y NGD+V+Y V+VFEC V G R++DG Sbjct: 60 DAIVREVWEETGLRVQVKEIKGIFGGKDFRHTYSNGDQVEYIVVVFECEGVGGESRAIDG 119 Query: 121 EAEELVFFSGDELPELAIPYPPEIF 145 E+ +L +FS E P+LA+PYP EIF Sbjct: 120 ESLKLQYFSSQERPKLALPYPEEIF 144 >Q81PP6.1 Q81PP6_BACAN MutT/nudix family protein Length = 145 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 82/145 (56%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 1 MPISEYYRSLRNKVGSGLLMVPSVAAVIRNEEGDILLLRKGGEQLWGLPAGAIEPGETPS 60 M +S YY+ +R ++G L+ +PSVAAVI+NE+G+IL GGE W LPAGAIEPGETP Sbjct: 1 MSMSLYYKKIREQLGHELIFIPSVAAVIKNEQGEILFQYPGGE-YWSLPAGAIEPGETPE 59 Query: 61 RALRREVFEETGLMVNPLRIIGVFGGEKYTYEYINGDRVQYSVIVFECAIVKGTLRSVDG 120 A+ REV+EETGL V + GVFGGE+Y + Y NGD+V+Y V+VFEC I G L+S+DG Sbjct: 60 EAVVREVWEETGLKVQVKKQKGVFGGEEYRHTYPNGDQVEYIVVVFECEITSGKLKSIDG 119 Query: 121 EAEELVFFSGDELPELAIPYPPEIF 145 E+ +L +FS E P LA+PYP +IF Sbjct: 120 ESLKLQYFSLSEKPPLALPYPDKIF 144 >C3PC97.1 C3PC97_BACAA MutT/NUDIX family protein Length = 145 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 82/145 (56%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 1 MPISEYYRSLRNKVGSGLLMVPSVAAVIRNEEGDILLLRKGGEQLWGLPAGAIEPGETPS 60 M +S YY+ +R ++G L+ +PSVAAVI+NE+G+IL GGE W LPAGAIEPGETP Sbjct: 1 MSMSLYYKKIREQLGHELIFIPSVAAVIKNEQGEILFQYPGGE-YWSLPAGAIEPGETPE 59 Query: 61 RALRREVFEETGLMVNPLRIIGVFGGEKYTYEYINGDRVQYSVIVFECAIVKGTLRSVDG 120 A+ REV+EETGL V + GVFGGE+Y + Y NGD+V+Y V+VFEC I G L+S+DG Sbjct: 60 EAVVREVWEETGLKVQVKKQKGVFGGEEYRHTYPNGDQVEYIVVVFECEITSGKLKSIDG 119 Query: 121 EAEELVFFSGDELPELAIPYPPEIF 145 E+ +L +FS E P LA+PYP +IF Sbjct: 120 ESLKLQYFSLSEKPPLALPYPDKIF 144 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.142 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,032,595,250 Number of extensions: 45005290 Number of successful extensions: 107937 Number of sequences better than 1.0e-05: 1220 Number of HSP's gapped: 108406 Number of HSP's successfully gapped: 1222 Length of query: 157 Length of database: 3,060,696,203 Length adjustment: 118 Effective length of query: 39 Effective length of database: 1,949,016,433 Effective search space: 76011640887 Effective search space used: 76011640887 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)