BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0040.p
         (188 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C1I820.1 C1I820_9CLOT Putative uncharacterized protein                115   2e-24
C4ID26.1 C4ID26_CLOBU Putative uncharacterized protein                107   4e-22
B1QWS1.1 B1QWS1_CLOBU Putative membrane protein                       107   4e-22
A6M2S2.1 A6M2S2_CLOB8 Putative uncharacterized protein                106   1e-21
Q183U4.1 Q183U4_CLOD6 Putative membrane protein                        96   2e-18

>C1I820.1 C1I820_9CLOT Putative uncharacterized protein
          Length = 173

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 81/134 (60%), Gaps = 2/134 (1%)

Query: 18  FYFMLYSFLGWVLEGSYNLYSLGTFRKEGFLKGPFKPMYGFXXXXXXXXXXXXXXXXXXX 77
           F F+LYS +GW++EG Y+    G F+KEGF+KGP+KPMYG                    
Sbjct: 9   FNFILYSIVGWIIEGVYSYIITGNFKKEGFMKGPYKPMYGIAFTILVLCDKYFNFNIITT 68

Query: 78  XMILLALIIPSAVEYTSGLLLKSAFHKQWWDYSGMSYQLQGHICLKFSLYWWGLATVCVY 137
             ++L LI+P++VE+ SG LLK  F+KQ+WDYS + Y  +G I L+FSLYW  L  V + 
Sbjct: 69  --LILFLIVPTSVEFISGYLLKEIFNKQYWDYSKLKYNYKGLITLRFSLYWMILCYVGIN 126

Query: 138 GLQPLIERLYLRIS 151
            +QP I  +YL + 
Sbjct: 127 LVQPTINNIYLSLE 140


>C4ID26.1 C4ID26_CLOBU Putative uncharacterized protein
          Length = 170

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 17  FFYFMLYSFLGWVLEGSYNLYSLGTFRKEGFLKGPFKPMYGFXXXXXXXXXXXXXXXXXX 76
           FF F++YSF GW++E  Y+ YS G F+K+GFLK P KPMYG                   
Sbjct: 4   FFTFIIYSFAGWIIEELYSKYSTGRFKKDGFLKEPLKPMYG--IAITILIIYYEFLEIRG 61

Query: 77  XXMILLALIIPSAVEYTSGLLLKSAFHKQWWDYSGMSYQLQGHICLKFSLYWWGLATVCV 136
              I   LI+P+ VEY SG LLK  F+K +WDYS + + + G+I L FS+YW  L+ + V
Sbjct: 62  IPFIFFCLIVPTTVEYISGYLLKHLFNKVYWDYSDLKHNINGYISLIFSIYWCILSYIGV 121

Query: 137 YGLQPLIERLYL 148
             L PLI   YL
Sbjct: 122 VYLNPLITSTYL 133


>B1QWS1.1 B1QWS1_CLOBU Putative membrane protein
          Length = 170

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 17  FFYFMLYSFLGWVLEGSYNLYSLGTFRKEGFLKGPFKPMYGFXXXXXXXXXXXXXXXXXX 76
           FF F++YSF GW++E  Y+ YS G F+K+GFLK P KPMYG                   
Sbjct: 4   FFTFIIYSFAGWIIEELYSKYSTGRFKKDGFLKEPLKPMYG--IAITILIIYYEFLEIRG 61

Query: 77  XXMILLALIIPSAVEYTSGLLLKSAFHKQWWDYSGMSYQLQGHICLKFSLYWWGLATVCV 136
              I   LI+P+ VEY SG LLK  F+K +WDYS + + + G+I L FS+YW  L+ + V
Sbjct: 62  IPFIFFCLIVPTTVEYISGYLLKHLFNKVYWDYSDLKHNINGYISLIFSIYWCILSYIGV 121

Query: 137 YGLQPLIERLYL 148
             L PLI   YL
Sbjct: 122 VYLNPLITSTYL 133


>A6M2S2.1 A6M2S2_CLOB8 Putative uncharacterized protein
          Length = 174

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 2/132 (1%)

Query: 18  FYFMLYSFLGWVLEGSYNLYSLGTFRKEGFLKGPFKPMYGFXXXXXXXXXXXXXXXXXXX 77
           F F+ YSF+GW+LE  Y+  +   F+++GFL GPFKPMYG                    
Sbjct: 9   FNFIFYSFIGWILEEGYSFSTTKKFQEDGFLIGPFKPMYG--MAVMFLIICNELLEISGI 66

Query: 78  XMILLALIIPSAVEYTSGLLLKSAFHKQWWDYSGMSYQLQGHICLKFSLYWWGLATVCVY 137
            +ILL  +IP+ VEY SG +LK +F+K +WDYS   Y + G + L+FS+YW  L+ + +Y
Sbjct: 67  PLILLCFLIPTTVEYISGYILKHSFNKVYWDYSEFRYNIHGFVTLRFSIYWMVLSLIGLY 126

Query: 138 GLQPLIERLYLR 149
            LQP +  LY+ 
Sbjct: 127 YLQPSLYDLYME 138


>Q183U4.1 Q183U4_CLOD6 Putative membrane protein
          Length = 179

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 2/124 (1%)

Query: 25  FLGWVLEGSYNLYSLGTFRKEGFLKGPFKPMYGFXXXXXXXXXXXXXXXXXXXXMILLAL 84
           F+GW++E  Y+ Y  G F+++GFL GPFKPMY                      ++LL L
Sbjct: 19  FIGWIIENLYSYYKQGHFQEDGFLNGPFKPMYAIAMSIIIEVSRFIDPNNIFA-LLLLCL 77

Query: 85  IIPSAVEYTSGLLLKSAFHKQWWDYSGMSYQLQGHICLKFSLYWWGLATVCVYGLQP-LI 143
           ++P+ VEY +G+L+K  F+K +WDYS   Y  +G +CLKFS+YW  L  + V   Q  ++
Sbjct: 78  VVPTVVEYITGILMKVYFNKVYWDYSDYKYNSRGIVCLKFSVYWTILTFIGVRYFQVYIV 137

Query: 144 ERLY 147
           + LY
Sbjct: 138 DSLY 141


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.329    0.146    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 814,489,943
Number of extensions: 25018990
Number of successful extensions: 56369
Number of sequences better than 1.0e-05: 184
Number of HSP's gapped: 56192
Number of HSP's successfully gapped: 184
Length of query: 188
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 60
Effective length of database: 1,854,806,283
Effective search space: 111288376980
Effective search space used: 111288376980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)