BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0035.p (300 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGJ2.1 B1DGJ2_9BACL Transcriptional regulator, ArsR family 367 e-100 B1DDC3.1 B1DDC3_9BACL Transcriptional regulator, ArsR family 328 5e-88 Q5WL11.1 Q5WL11_BACSK Transcriptional regulator 295 5e-78 Q9KBQ6.1 Q9KBQ6_BACHD BH1869 protein 294 7e-78 B8I0K3.1 B8I0K3_CLOCE Transcriptional regulator, ArsR family 292 3e-77 >B1DGJ2.1 B1DGJ2_9BACL Transcriptional regulator, ArsR family Length = 299 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/297 (58%), Positives = 217/297 (73%) Query: 3 LTTNSESLRVYEALASEVRLRIIDLLSDREMHIKEXXXXXXXXXXXXXXHVAKLQRAGIV 62 L+TN+ESL VYEALASEVRL+IID L +RE H+KE H+ KL++AGIV Sbjct: 2 LSTNAESLMVYEALASEVRLKIIDKLFERERHVKELASEMFLSSAVISGHIRKLEQAGIV 61 Query: 63 SSQMKRIDGGTYKYCSLSANFLQIKLAGSRGISRKVVEVSVPVGHYTDLQAAPTCGIATT 122 S+MKRIDGGTYKYC + + FLQIKL+ + S +SVP+GHYTD +A PTCG+ATT Sbjct: 62 GSKMKRIDGGTYKYCYIKSEFLQIKLSPNVSSSLSFHGLSVPIGHYTDYEAWPTCGVATT 121 Query: 123 EKLIGYYDDPRYFLDPERVDAGILWFAKGYVEYKVPNYLFMDQKVQEIEITMEIGSEAPH 182 +K+IG YD+P F+DPERV+AGILW A+G+VEYK+PNYL+ DQ++ EIEI+ EIGSEAP Sbjct: 122 DKMIGQYDNPACFMDPERVNAGILWLARGWVEYKIPNYLYKDQRLHEIEISFEIGSEAPR 181 Query: 183 VNEKWPSDITFTLNGVELGKWTSPGDFGVMRGRLTPSWWNSNVNQYGLLKVLRINSGGTY 242 VNE WPSDI F+LNG LG WTSPGDFG RGRLTP WW+S+VNQYGLLKVLR+ G+Y Sbjct: 182 VNENWPSDIHFSLNGKSLGVWTSPGDFGKTRGRLTPDWWSSDVNQYGLLKVLRVKENGSY 241 Query: 243 IDGQQISAVTLNEVSWQQDQWSFRLTAEDSXXXXXXXXXXXXXXXNYEQDIVFRVYY 299 IDG +IS V L ++ W+FR+ AED+ NY+QDIVFR +Y Sbjct: 242 IDGLKISDVGLRDIGTGAINWTFRIAAEDTGRGRGGLTLYGRGFGNYDQDIVFRSFY 298 >B1DDC3.1 B1DDC3_9BACL Transcriptional regulator, ArsR family Length = 305 Score = 328 bits (840), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 151/303 (49%), Positives = 209/303 (68%), Gaps = 4/303 (1%) Query: 1 MYLTTNSES--LRVYEALASEVRLRIIDLLS--DREMHIKEXXXXXXXXXXXXXXHVAKL 56 M + T+++ L +YEALAS VRL I+DLL+ M++K+ HV KL Sbjct: 1 MLIKTDTDHAWLPLYEALASPVRLNILDLLAAASEPMNVKDLAAALGLSSAIVTMHVRKL 60 Query: 57 QRAGIVSSQMKRIDGGTYKYCSLSANFLQIKLAGSRGISRKVVEVSVPVGHYTDLQAAPT 116 ++AGI+ ++M R GGT+K C ++A+ +QI L + I +K E+S+P+GHYT+ + PT Sbjct: 61 EQAGIIQTKMVRKQGGTHKICEIAASRIQIDLPQAGFIPKKTHEISIPIGHYTEFEVHPT 120 Query: 117 CGIATTEKLIGYYDDPRYFLDPERVDAGILWFAKGYVEYKVPNYLFMDQKVQEIEITMEI 176 CGIATTEK+IG +DD RYFL+PER++AGILWF +GYVEY++PNYL Q+ +E+EI +EI Sbjct: 121 CGIATTEKVIGQFDDARYFLEPERMNAGILWFGQGYVEYRIPNYLLPGQRPEELEIVLEI 180 Query: 177 GSEAPHVNEKWPSDITFTLNGVELGKWTSPGDFGVMRGRLTPSWWNSNVNQYGLLKVLRI 236 SEAP NE WPSDI FTLNGV +G WTSPGD+G ++G+ TPSWW VNQYGLLK++R+ Sbjct: 181 SSEAPGYNENWPSDIVFTLNGVRIGMWTSPGDYGAIKGKYTPSWWQDFVNQYGLLKIIRV 240 Query: 237 NSGGTYIDGQQISAVTLNEVSWQQDQWSFRLTAEDSXXXXXXXXXXXXXXXNYEQDIVFR 296 GT+IDGQQIS ++++ ++QW FRL ED+ NY QD++FR Sbjct: 241 QKNGTFIDGQQISDTGIDQIGLNRNQWVFRLAVEDNAAHVGGLTLFGKGFGNYNQDMIFR 300 Query: 297 VYY 299 V+Y Sbjct: 301 VHY 303 >Q5WL11.1 Q5WL11_BACSK Transcriptional regulator Length = 303 Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 140/299 (46%), Positives = 188/299 (62%), Gaps = 1/299 (0%) Query: 3 LTTNSESLRVYEALASEVRLRIIDLLSDREMHIKEXXXXXXXXXXXXXXHVAKLQRAGIV 62 L +SL VYEALAS +RL ++ LL++R M+IKE HV KL++AG++ Sbjct: 5 LDLTKQSLPVYEALASRIRLNVLQLLAERSMNIKELAESQQVSSAIMTKHVQKLEKAGLI 64 Query: 63 SSQMKRIDGGTYKYCSLSANFLQIKLAGSR-GISRKVVEVSVPVGHYTDLQAAPTCGIAT 121 + R G K CSL QI G +R E V VGH+TD PTCG+AT Sbjct: 65 DTTHVRGKAGVQKMCSLRVRHAQIAFPNKENGPTRAFHESHVSVGHFTDFYVEPTCGLAT 124 Query: 122 TEKLIGYYDDPRYFLDPERVDAGILWFAKGYVEYKVPNYLFMDQKVQEIEITMEIGSEAP 181 E ++G +D+PRYFLDP RV+A ILWF KG+VEYK+ N++ + +E+EI+ME+ SEAP Sbjct: 125 PETIVGEFDEPRYFLDPMRVNARILWFYKGFVEYKLSNFIHGGETPKELEISMELSSEAP 184 Query: 182 HVNEKWPSDITFTLNGVELGKWTSPGDFGVMRGRLTPSWWNSNVNQYGLLKVLRINSGGT 241 N+ WPSD++FT NGV LG W SPGDFG +G+ TP+WW +NQYGLLKV+RI GT Sbjct: 185 FTNDNWPSDVSFTFNGVSLGYWRSPGDFGDQKGKYTPAWWPRGINQYGLLKVIRITEAGT 244 Query: 242 YIDGQQISAVTLNEVSWQQDQWSFRLTAEDSXXXXXXXXXXXXXXXNYEQDIVFRVYYE 300 +IDG+Q+S V L +VS ++ W+FR+ + NY+QDIVFR+YYE Sbjct: 245 FIDGKQLSDVKLADVSIREKVWTFRVAVGEEGVHIGGVTLFGSSFGNYDQDIVFRLYYE 303 >Q9KBQ6.1 Q9KBQ6_BACHD BH1869 protein Length = 313 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 138/299 (46%), Positives = 190/299 (63%) Query: 1 MYLTTNSESLRVYEALASEVRLRIIDLLSDREMHIKEXXXXXXXXXXXXXXHVAKLQRAG 60 M L ++ESL VYEALAS+VRL II L+ + M+I+E H+ KL++AG Sbjct: 1 MQLDISNESLPVYEALASKVRLAIIQQLTRKSMNIRELAEAVGLSSAIMTMHIKKLEKAG 60 Query: 61 IVSSQMKRIDGGTYKYCSLSANFLQIKLAGSRGISRKVVEVSVPVGHYTDLQAAPTCGIA 120 I+ ++M G K C L + ++I + + + + VGHYTD PTCG+A Sbjct: 61 IIRTEMVPGKAGIQKLCILDTDHIEINFPPKKESLKLYHQTILSVGHYTDFLVEPTCGLA 120 Query: 121 TTEKLIGYYDDPRYFLDPERVDAGILWFAKGYVEYKVPNYLFMDQKVQEIEITMEIGSEA 180 T EK+IG +D+PRYFLDPERV+A ILWF+KGY+EYK+PN+L + +E+EI++E+ SEA Sbjct: 121 TAEKIIGEFDEPRYFLDPERVNAKILWFSKGYIEYKIPNFLHHSENPKELEISLELSSEA 180 Query: 181 PHVNEKWPSDITFTLNGVELGKWTSPGDFGVMRGRLTPSWWNSNVNQYGLLKVLRINSGG 240 P N+ WPSDI+F N V++G WTSPGDFG G+ TP WW +NQYGLLK +RI G Sbjct: 181 PFTNDNWPSDISFYFNNVKIGIWTSPGDFGDSPGKYTPDWWPKVINQYGLLKFIRITKEG 240 Query: 241 TYIDGQQISAVTLNEVSWQQDQWSFRLTAEDSXXXXXXXXXXXXXXXNYEQDIVFRVYY 299 T+I+G +IS VT+++V + QWSFR+ D NY QDI+FR+YY Sbjct: 241 TFIEGAKISDVTIDDVHIRSKQWSFRVAVPDDAENVGGVTIFGEGFGNYNQDIIFRLYY 299 >B8I0K3.1 B8I0K3_CLOCE Transcriptional regulator, ArsR family Length = 300 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 136/291 (46%), Positives = 188/291 (64%) Query: 10 LRVYEALASEVRLRIIDLLSDREMHIKEXXXXXXXXXXXXXXHVAKLQRAGIVSSQMKRI 69 L VYEAL+S VR++II++L+ ++IK+ HV KL+ AGIV S+ K I Sbjct: 10 LPVYEALSSRVRIKIINILAQNSLNIKQIAEELGLSSAIVTMHVKKLEAAGIVHSERKSI 69 Query: 70 DGGTYKYCSLSANFLQIKLAGSRGISRKVVEVSVPVGHYTDLQAAPTCGIATTEKLIGYY 129 G K C L + L+I+ + R E S+P+GHY+D PTCGIAT EK+IG + Sbjct: 70 KGAVQKICFLDVDSLEIQFPSRKAKVRSYHEFSMPIGHYSDFSVTPTCGIATPEKVIGQF 129 Query: 130 DDPRYFLDPERVDAGILWFAKGYVEYKVPNYLFMDQKVQEIEITMEIGSEAPHVNEKWPS 189 DDPRYFLDP+RV+AGILWF +G+VEY++PN+L Q+ +E+EI+ME+GSEAP +N WPS Sbjct: 130 DDPRYFLDPDRVNAGILWFTEGFVEYRIPNFLLSVQQPEELEISMELGSEAPGINSNWPS 189 Query: 190 DITFTLNGVELGKWTSPGDFGVMRGRLTPSWWNSNVNQYGLLKVLRINSGGTYIDGQQIS 249 DI+F LN +G+WTSPGD+G RG+ TP WW+ V QYGL K +RI G+YIDG ++S Sbjct: 190 DISFFLNERIIGQWTSPGDYGNSRGKYTPRWWSLQVGQYGLYKAIRIAQDGSYIDGIKVS 249 Query: 250 AVTLNEVSWQQDQWSFRLTAEDSXXXXXXXXXXXXXXXNYEQDIVFRVYYE 300 TL+ + +Q WSFR+ NY +DI+F++YY+ Sbjct: 250 DTTLSSLDIRQKYWSFRIAVLPESQNVGGVTIFGKGFGNYSRDIMFKLYYK 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,615,575,845 Number of extensions: 64112985 Number of successful extensions: 122926 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 122859 Number of HSP's successfully gapped: 48 Length of query: 300 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 165 Effective length of database: 1,788,859,178 Effective search space: 295161764370 Effective search space used: 295161764370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)