BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0034.p (502 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGJ3.1 B1DGJ3_9BACL Alpha-N-arabinofuranosidase EC=3.2.1.55 801 0.0 B1DDC4.1 B1DDC4_9BACL Alpha-N-arabinofuranosidase EC=3.2.1.55 704 0.0 C3J344.1 C3J344_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 704 0.0 B7YCM5.1 B7YCM5_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 704 0.0 B3EYN4.1 B3EYN4_BACST Arabinofuranosidase 702 0.0 >B1DGJ3.1 B1DGJ3_9BACL Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 503 Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/501 (75%), Positives = 429/501 (85%) Query: 1 MTIKASMIVDKDFKLAEVDPRLYGSFIEHLGRAVYGGIYEPGHATADENGFRQDVLNAVR 60 MTI++SM++DK+F ++ VDPR+YGSFIEHLGRAVYGGIY+P H TADE+GFRQD + A++ Sbjct: 1 MTIRSSMLIDKNFTVSPVDPRVYGSFIEHLGRAVYGGIYDPEHPTADESGFRQDAIEAIK 60 Query: 61 ALNVPIIRYPGGNFVSGYNWEDGVGPKAERKQTLELAWWTTETNHVGTNEFAEWAKLAGS 120 AL VPIIRYPGGNFVSGYNWEDGVGPK+ERK+ LELAWWTTETN VGTNEFA+WAKL GS Sbjct: 61 ALQVPIIRYPGGNFVSGYNWEDGVGPKSERKRLLELAWWTTETNEVGTNEFADWAKLVGS 120 Query: 121 EVMMAVNLGTRGIDAARNLVEYCNHPSGSYWSDLRISHGVKAPHQFKTWCLGNEMDGPWQ 180 +VMMAVNLGTRG+DAARNLVEYCNHP G+YWSDLRISHG K PH+FKTWCLGNEMDGPWQ Sbjct: 121 DVMMAVNLGTRGMDAARNLVEYCNHPGGTYWSDLRISHGYKEPHRFKTWCLGNEMDGPWQ 180 Query: 181 IGAKTAVEYGRLANETAKAMRWVDPSLELVACGSSGSGMSTFAEWEATVLDLTYDNVDFL 240 IGAKTAVEYGRLANETAK M+WVDPS+ELVACGSS SGMSTFA+WEATVLDLTYD VD+L Sbjct: 181 IGAKTAVEYGRLANETAKVMKWVDPSIELVACGSSSSGMSTFADWEATVLDLTYDQVDYL 240 Query: 241 SLHTYYNNNDSDTANFLAKSLDLDQFIDSVAAICDXXXXXXXXXXXXXXXXDEWNVWKSQ 300 SLHTYYNNN++DTANFLAKSLD+DQFIDSVAAICD DEWNVW + Sbjct: 241 SLHTYYNNNNNDTANFLAKSLDMDQFIDSVAAICDYVKAKKRSKKTIMLSLDEWNVWNTI 300 Query: 301 GSSRMETHWQIAPPEFEDVYNMEDALAVGCCLISLLKHADRVKMACLAQLINTIAPITTE 360 G+SR + WQIAPPEFEDVY EDALAVGC LI+LLKHADRVKMAC+AQLIN IAPI TE Sbjct: 301 GTSRADERWQIAPPEFEDVYTHEDALAVGCFLITLLKHADRVKMACIAQLINVIAPIMTE 360 Query: 361 NGGPLWLQTTYYPYMHASLYGRGTVLHPLITSPKYDSSDFTDVPYLEAVSVYNEELSEIT 420 G +WLQTTYYP++HAS +GRGTVL I+SPKYDS DFTDVPYLEA+SV++EE IT Sbjct: 361 TNGAIWLQTTYYPFLHASNFGRGTVLQANISSPKYDSKDFTDVPYLEAISVFDEEQGLIT 420 Query: 421 VFAVNRHLSEGMELSVDLRSFGPTEVIQHTVMEHEDLQAANTKLHPGNVLPHDRGTAVAE 480 VFAVNRHL E MELS+DLRSFG VI+H VME EDL+A NTK +P NV+PH G A+ Sbjct: 421 VFAVNRHLEEQMELSLDLRSFGEVSVIEHIVMESEDLKATNTKSNPRNVVPHAGGRTTAD 480 Query: 481 DGRITALLSKASWNVIRLRVK 501 +G + A+L KASWNVIRL+ K Sbjct: 481 NGSVQAILGKASWNVIRLQTK 501 >B1DDC4.1 B1DDC4_9BACL Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 503 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/503 (66%), Positives = 384/503 (76%), Gaps = 2/503 (0%) Query: 1 MTIKASMIVDKDFKLAEVDPRLYGSFIEHLGRAVYGGIYEPGHATADENGFRQDVLNAVR 60 MT +A MIVDKDF + EVD R+YGSFIEHLGRAVYGGIYEP H +ADE GFR DVL V+ Sbjct: 1 MTNRAKMIVDKDFIVGEVDKRIYGSFIEHLGRAVYGGIYEPDHPSADEQGFRSDVLELVK 60 Query: 61 ALNVPIIRYPGGNFVSGYNWEDGVGPKAERKQTLELAWWTTETNHVGTNEFAEWAKLAGS 120 L+VPI+RYPGGNFVSGYNWEDG+GP A+R + LELAW T E N VG NEF +W K A + Sbjct: 61 GLDVPIVRYPGGNFVSGYNWEDGIGPLADRPKRLELAWRTIEPNLVGFNEFVDWCKKANT 120 Query: 121 EVMMAVNLGTRGIDAARNLVEYCNHPSGSYWSDLRISHGVKAPHQFKTWCLGNEMDGPWQ 180 E MMAVNLGTRG + ARNL+EY NH SGSYWSDLRI HG K PH KTWCLGNEMDGPWQ Sbjct: 121 EAMMAVNLGTRGPEEARNLIEYSNHASGSYWSDLRIKHGYKDPHNIKTWCLGNEMDGPWQ 180 Query: 181 IGAKTAVEYGRLANETAKAMRWVDPSLELVACGSSGSGMSTFAEWEATVLDLTYDNVDFL 240 IGAKTAVEYGR+ANETAK MRWVDP++ELVACGSS GM TF EWEATVLDLTYDNVD+L Sbjct: 181 IGAKTAVEYGRIANETAKVMRWVDPTIELVACGSSALGMPTFPEWEATVLDLTYDNVDYL 240 Query: 241 SLHTYYNNNDSDTANFLAKSLDLDQFIDSVAAICDXXXXXXXXXXXXXXXXDEWNVW-KS 299 SLH YY N D DTANFLA+S+ +D FI +V + D DEWNVW S Sbjct: 241 SLHQYYGNRDKDTANFLAQSMGMDSFIQTVISTADYVKAKKRSKKNINLSFDEWNVWFHS 300 Query: 300 QGSSRMETHWQIAPPEFEDVYNMEDALAVGCCLISLLKHADRVKMACLAQLINTIAPITT 359 S R W IAPP+ ED+Y EDAL VGC LISLLK ADRVKMACLAQL+N IAPI T Sbjct: 301 NESDRKIEPWSIAPPQLEDIYTHEDALVVGCMLISLLKRADRVKMACLAQLVNVIAPIMT 360 Query: 360 ENGGPLWLQTTYYPYMHASLYGRGTVLHPLITSPKYDSSDFTDVPYLEAVSVYNEELSEI 419 ENGG W Q+ YYPYMHASL+GRGTVL PL+ S KYDS D+TDVPY+EAV+V+NEEL E+ Sbjct: 361 ENGGAAWKQSIYYPYMHASLFGRGTVLVPLLKSDKYDSKDYTDVPYVEAVAVHNEELGEV 420 Query: 420 TVFAVNRHLSEGMELSVDLRSFGPTEVIQHTVMEHEDLQAANTKLHPGNVLPHDRGTA-V 478 TVFAVNR L + +DLRSFG VI+H V+E++DLQA NT +P V PH G A + Sbjct: 421 TVFAVNRDLDQARTFEIDLRSFGSFRVIEHIVLENDDLQAVNTAANPDRVKPHANGNAKL 480 Query: 479 AEDGRITALLSKASWNVIRLRVK 501 ++G I L KASWNVIR++++ Sbjct: 481 EQNGTIETSLGKASWNVIRIKLQ 503 >C3J344.1 C3J344_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 502 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/498 (65%), Positives = 387/498 (77%), Gaps = 2/498 (0%) Query: 2 TIKASMIVDKDFKLAEVDPRLYGSFIEHLGRAVYGGIYEPGHATADENGFRQDVLNAVRA 61 T KA+MI++KDFK+AE+D R+YGSFIEHLGRAVYGGIYEPGH ADENGFRQDV+ V+ Sbjct: 3 TKKATMIIEKDFKIAEIDKRIYGSFIEHLGRAVYGGIYEPGHPQADENGFRQDVIELVKE 62 Query: 62 LNVPIIRYPGGNFVSGYNWEDGVGPKAERKQTLELAWWTTETNHVGTNEFAEWAKLAGSE 121 L VPIIRYPGGNFVSGYNWEDGVGPK +R + L+LAW + ETN +G NEF +WAK+ G+E Sbjct: 63 LQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDLAWRSVETNEIGLNEFMDWAKMVGAE 122 Query: 122 VMMAVNLGTRGIDAARNLVEYCNHPSGSYWSDLRISHGVKAPHQFKTWCLGNEMDGPWQI 181 V MAVNLGTRGIDAARNLVEYCNHPSGSY+SDLRISHG K PH+ KTWCLGNEMDGPWQI Sbjct: 123 VNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRISHGYKEPHKIKTWCLGNEMDGPWQI 182 Query: 182 GAKTAVEYGRLANETAKAMRWVDPSLELVACGSSGSGMSTFAEWEATVLDLTYDNVDFLS 241 G KTAVEYGR+A E AK M+WVDP++ELV CGSS M TFAEWEATVLD TYD+VD++S Sbjct: 183 GHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYIS 242 Query: 242 LHTYYNNNDSDTANFLAKSLDLDQFIDSVAAICDXXXXXXXXXXXXXXXXDEWNVW-KSQ 300 LH YY N D++TAN+LA SL++D FI SV AI D DEWNVW S Sbjct: 243 LHQYYGNRDNNTANYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSN 302 Query: 301 GSSRMETHWQIAPPEFEDVYNMEDALAVGCCLISLLKHADRVKMACLAQLINTIAPITTE 360 + ++ W +APP ED+YN EDAL VGC LI+L+KHADRVK+ACLAQL+N IAPI TE Sbjct: 303 EADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQLVNVIAPIMTE 362 Query: 361 NGGPLWLQTTYYPYMHASLYGRGTVLHPLITSPKYDSSDFTDVPYLEAVSVYNEELSEIT 420 GP W QT YYP+MHAS+YGRG LHP+I+SPKYDS DFTDVPYLE+++VYNEE E+T Sbjct: 363 KNGPAWKQTIYYPFMHASVYGRGVALHPVISSPKYDSKDFTDVPYLESIAVYNEEKEEVT 422 Query: 421 VFAVNRHLSEGMELSVDLRSFGPTEVIQHTVMEHEDLQAANTKLHPGNVLPHDRGTAVAE 480 +FAVNR + + + L D RSF VI+H V+EHE+++ N+ V+PH G A Sbjct: 423 IFAVNRDMDDALLLECDARSFEDYHVIEHIVLEHENVKQTNSA-QSSPVVPHRNGDAQIS 481 Query: 481 DGRITALLSKASWNVIRL 498 DG++ A L K SWNVIRL Sbjct: 482 DGKVLATLPKLSWNVIRL 499 >B7YCM5.1 B7YCM5_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 502 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/498 (65%), Positives = 387/498 (77%), Gaps = 2/498 (0%) Query: 2 TIKASMIVDKDFKLAEVDPRLYGSFIEHLGRAVYGGIYEPGHATADENGFRQDVLNAVRA 61 T KA+MI++KDFK+AE+D R+YGSFIEHLGRAVYGGIYEPGH ADENGFRQDV+ V+ Sbjct: 3 TKKATMIIEKDFKIAEIDKRIYGSFIEHLGRAVYGGIYEPGHPQADENGFRQDVIELVKE 62 Query: 62 LNVPIIRYPGGNFVSGYNWEDGVGPKAERKQTLELAWWTTETNHVGTNEFAEWAKLAGSE 121 L VPIIRYPGGNFVSGYNWEDGVGPK +R + L+LAW + ETN +G NEF +WAK+ G+E Sbjct: 63 LQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDLAWRSVETNEIGLNEFMDWAKMVGAE 122 Query: 122 VMMAVNLGTRGIDAARNLVEYCNHPSGSYWSDLRISHGVKAPHQFKTWCLGNEMDGPWQI 181 V MAVNLGTRGIDAARNLVEYCNHPSGSY+SDLRISHG K PH+ KTWCLGNEMDGPWQI Sbjct: 123 VNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRISHGYKEPHKIKTWCLGNEMDGPWQI 182 Query: 182 GAKTAVEYGRLANETAKAMRWVDPSLELVACGSSGSGMSTFAEWEATVLDLTYDNVDFLS 241 G KTAVEYGR+A E AK M+WVDP++ELV CGSS M TFAEWEATVLD TYD+VD++S Sbjct: 183 GHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYIS 242 Query: 242 LHTYYNNNDSDTANFLAKSLDLDQFIDSVAAICDXXXXXXXXXXXXXXXXDEWNVW-KSQ 300 LH YY N D++TAN+LA SL++D FI SV AI D DEWNVW S Sbjct: 243 LHQYYGNRDNNTANYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSN 302 Query: 301 GSSRMETHWQIAPPEFEDVYNMEDALAVGCCLISLLKHADRVKMACLAQLINTIAPITTE 360 + ++ W +APP ED+YN EDAL VGC LI+L+KHADRVK+ACLAQL+N IAPI TE Sbjct: 303 EADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQLVNVIAPIMTE 362 Query: 361 NGGPLWLQTTYYPYMHASLYGRGTVLHPLITSPKYDSSDFTDVPYLEAVSVYNEELSEIT 420 GP W QT YYP+MHAS+YGRG LHP+I+SPKYDS DFTDVPYLE+++VYNEE E+T Sbjct: 363 KNGPAWKQTIYYPFMHASVYGRGVALHPVISSPKYDSKDFTDVPYLESIAVYNEEKEEVT 422 Query: 421 VFAVNRHLSEGMELSVDLRSFGPTEVIQHTVMEHEDLQAANTKLHPGNVLPHDRGTAVAE 480 +FAVNR + + + L D RSF VI+H V+EHE+++ N+ V+PH G A Sbjct: 423 IFAVNRDMDDALLLECDARSFEDYHVIEHIVLEHENVKQTNSA-QSSPVVPHRNGDAQIS 481 Query: 481 DGRITALLSKASWNVIRL 498 DG++ A L K SWNVIRL Sbjct: 482 DGKVLATLPKLSWNVIRL 499 >B3EYN4.1 B3EYN4_BACST Arabinofuranosidase Length = 502 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/498 (65%), Positives = 388/498 (77%), Gaps = 2/498 (0%) Query: 2 TIKASMIVDKDFKLAEVDPRLYGSFIEHLGRAVYGGIYEPGHATADENGFRQDVLNAVRA 61 T KA+MI++KDFK+AE+D R+YGSFIEHLGRAVYGGIYEPGH ADENGFRQDV+ V+ Sbjct: 3 TKKATMIIEKDFKIAEIDKRIYGSFIEHLGRAVYGGIYEPGHPQADENGFRQDVIELVKE 62 Query: 62 LNVPIIRYPGGNFVSGYNWEDGVGPKAERKQTLELAWWTTETNHVGTNEFAEWAKLAGSE 121 L VPIIRYPGGNFVSGYNWEDGVGPK +R + L+LAW + ETN +G NEF +WAK+ G+E Sbjct: 63 LQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDLAWKSVETNEIGLNEFMDWAKMVGAE 122 Query: 122 VMMAVNLGTRGIDAARNLVEYCNHPSGSYWSDLRISHGVKAPHQFKTWCLGNEMDGPWQI 181 V MAVNLGTRGIDAARNLVEYCNHPSGSY+SDLRI+HG K PH+ KTWCLGNEMDGPWQI Sbjct: 123 VNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNEMDGPWQI 182 Query: 182 GAKTAVEYGRLANETAKAMRWVDPSLELVACGSSGSGMSTFAEWEATVLDLTYDNVDFLS 241 G KTAVEYGR+A E AK M+WVDP++ELV CGSS M TFAEWEATVLD TYD+VD++S Sbjct: 183 GHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYIS 242 Query: 242 LHTYYNNNDSDTANFLAKSLDLDQFIDSVAAICDXXXXXXXXXXXXXXXXDEWNVW-KSQ 300 LH YY N D+DTAN+LA SL++D FI SV AI D DEWNVW S Sbjct: 243 LHQYYGNRDNDTANYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSN 302 Query: 301 GSSRMETHWQIAPPEFEDVYNMEDALAVGCCLISLLKHADRVKMACLAQLINTIAPITTE 360 + ++ W +APP ED+YN EDAL VGC LI+L+KHADRVK+ACLAQL+N IAPI TE Sbjct: 303 EADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQLVNVIAPIMTE 362 Query: 361 NGGPLWLQTTYYPYMHASLYGRGTVLHPLITSPKYDSSDFTDVPYLEAVSVYNEELSEIT 420 GP W QT YYP+MHAS+YGRG LHP+I+SPKYDS DFTDVPYLE+++VYNEE E+T Sbjct: 363 KNGPAWKQTIYYPFMHASVYGRGVALHPVISSPKYDSKDFTDVPYLESIAVYNEEKEEVT 422 Query: 421 VFAVNRHLSEGMELSVDLRSFGPTEVIQHTVMEHEDLQAANTKLHPGNVLPHDRGTAVAE 480 +FAVNR + + + L D+RSF VI+H V+EH++++ N+ V+PH G A Sbjct: 423 IFAVNRDMEDALLLECDVRSFEDYRVIEHIVLEHDNVKQTNSA-QSSPVVPHRNGDAQLS 481 Query: 481 DGRITALLSKASWNVIRL 498 D +++A L K SWNVIRL Sbjct: 482 DRKVSATLPKLSWNVIRL 499 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,034,340,406 Number of extensions: 124375238 Number of successful extensions: 267823 Number of sequences better than 1.0e-05: 319 Number of HSP's gapped: 267123 Number of HSP's successfully gapped: 323 Length of query: 502 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 362 Effective length of database: 1,741,754,103 Effective search space: 630514985286 Effective search space used: 630514985286 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)