BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0033.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P42102.4 YXAC_BACSU Uncharacterized protein yxaC 197 4e-49 A7Z0W7.1 A7Z0W7_BACA2 YxaC 195 3e-48 Q2BD99.1 Q2BD99_9BACI Putative uncharacterized protein 162 2e-38 A3I4N6.1 A3I4N6_9BACI Putative uncharacterized protein 135 2e-30 B1HPT0.1 B1HPT0_LYSSC Hypothetical yxaC protein 135 2e-30 >P42102.4 YXAC_BACSU Uncharacterized protein yxaC Length = 230 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 108/218 (49%), Positives = 133/218 (61%) Query: 11 LMNVGIYLFMAMLYKRFRXXXXXXXXXXXXXXXXXXXGFDISYDTYMIGGEWINRLLGPA 70 L+ V YL M LYKRF F +SY+ YMIGG+WIN LLGPA Sbjct: 12 LLTVAAYLAMVKLYKRFPLPFLIPVLTTTILIVAALMMFHVSYEGYMIGGKWINSLLGPA 71 Query: 71 VVSLAYPLYKQRHVLWQNLPAXXXXXXXXXXXXMFSGMLLAAGLGFSKLYVLSILPKSIT 130 VV+LAYPLYKQ H++ ++ M SG++ A G +LSILPKSIT Sbjct: 72 VVALAYPLYKQWHIIVKHCVPILGGVLVGLCMGMISGLIFAEAFGIDHDLLLSILPKSIT 131 Query: 131 TAVAIQIXXXXXXXXXXXXVFVMIAGFTGAIGGPYIIRLFRIRSESGIGIGLGTASHALG 190 T VAIQI VFVMIAGF+G I GP ++ RIRS G GI LG+ASHALG Sbjct: 132 TPVAIQIAAGLGGVPSMTVVFVMIAGFSGVILGPLFLKWLRIRSSLGQGIALGSASHALG 191 Query: 191 TAKALEYGEQSVSMSSVAMTVCAIVGSIVGPIVSWIMY 228 T+KALEYGE +VSMSSV+MT+CA++GS GP+V W+ + Sbjct: 192 TSKALEYGELAVSMSSVSMTLCAVLGSFFGPLVVWLFH 229 >A7Z0W7.1 A7Z0W7_BACA2 YxaC Length = 230 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 108/217 (49%), Positives = 133/217 (61%) Query: 10 VLMNVGIYLFMAMLYKRFRXXXXXXXXXXXXXXXXXXXGFDISYDTYMIGGEWINRLLGP 69 +L YL M LY RF F ISY YMIGG+WIN LLGP Sbjct: 11 ILFTAAAYLAMVKLYVRFPYPFLIPVLTTTIFIIAVLLVFHISYKDYMIGGQWINSLLGP 70 Query: 70 AVVSLAYPLYKQRHVLWQNLPAXXXXXXXXXXXXMFSGMLLAAGLGFSKLYVLSILPKSI 129 AVV+LAYPLYKQR VL + + M SG+L A G S+ +LSI+PKSI Sbjct: 71 AVVALAYPLYKQRRVLIKYMFPIIGGVLAGLFSGMVSGLLFAELFGISRSLILSIIPKSI 130 Query: 130 TTAVAIQIXXXXXXXXXXXXVFVMIAGFTGAIGGPYIIRLFRIRSESGIGIGLGTASHAL 189 TT VAIQI VFVMIAGF+G I GP +++ RIRS G GI G+ASHAL Sbjct: 131 TTPVAIQIASGIGGVPSMTVVFVMIAGFSGVILGPLLLKWIRIRSSLGKGIAFGSASHAL 190 Query: 190 GTAKALEYGEQSVSMSSVAMTVCAIVGSIVGPIVSWI 226 GT+KA+EYGE +VSMSSV+MT+CA++GS+ GP+V+W+ Sbjct: 191 GTSKAMEYGELTVSMSSVSMTLCAVLGSVFGPVVAWM 227 >Q2BD99.1 Q2BD99_9BACI Putative uncharacterized protein Length = 221 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/216 (44%), Positives = 128/216 (59%) Query: 13 NVGIYLFMAMLYKRFRXXXXXXXXXXXXXXXXXXXGFDISYDTYMIGGEWINRLLGPAVV 72 + IY+ MA +YKR+ G + Y YM GG+WI+ LLGPAV Sbjct: 5 TITIYMVMASVYKRYSYPVFIPVLTSTIIIVALLAGLHVPYKEYMTGGKWIHFLLGPAVT 64 Query: 73 SLAYPLYKQRHVLWQNLPAXXXXXXXXXXXXMFSGMLLAAGLGFSKLYVLSILPKSITTA 132 +LAYPLY QR VL + M +GML A LG + +LS++PKSITT Sbjct: 65 ALAYPLYTQREVLKKYSLPVLGGVFTGLITGMITGMLFAMLLGMNHELILSLIPKSITTP 124 Query: 133 VAIQIXXXXXXXXXXXXVFVMIAGFTGAIGGPYIIRLFRIRSESGIGIGLGTASHALGTA 192 VA+QI +FV +AGF+G + GP II+ RIRS G GI LG+ASH LGT+ Sbjct: 125 VAMQIADGIGGIPSMTVIFVTLAGFSGVLLGPSIIKWVRIRSSLGRGIALGSASHGLGTS 184 Query: 193 KALEYGEQSVSMSSVAMTVCAIVGSIVGPIVSWIMY 228 KA EYGE SVSMSSV+MT+CA++GS+ GP++ W+ + Sbjct: 185 KASEYGEVSVSMSSVSMTLCALLGSVFGPVIVWLFH 220 >A3I4N6.1 A3I4N6_9BACI Putative uncharacterized protein Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 119/219 (54%) Query: 4 LLAAGFVLMNVGIYLFMAMLYKRFRXXXXXXXXXXXXXXXXXXXGFDISYDTYMIGGEWI 63 ++ A VL + +++ LY+RF F+I Y TYM+GGEW+ Sbjct: 1 MIEAIVVLSTIIMFILFTKLYQRFPHPIMIPLVTTTVVSAVILLIFNIPYSTYMVGGEWL 60 Query: 64 NRLLGPAVVSLAYPLYKQRHVLWQNLPAXXXXXXXXXXXXMFSGMLLAAGLGFSKLYVLS 123 ++LGPAVV+LAYPLY QR ++ + + + + +L +G ++L+ Sbjct: 61 QKMLGPAVVALAYPLYNQRAIIIKYKYSILSGLFIGMVTGLVTIFVLLKWIGVKSSWMLT 120 Query: 124 ILPKSITTAVAIQIXXXXXXXXXXXXVFVMIAGFTGAIGGPYIIRLFRIRSESGIGIGLG 183 LPKS+TT V +Q+ VFVMIAGF GAI GP +I+ +I S G+ +G Sbjct: 121 ALPKSLTTPVGMQVSETIGGIPPLTAVFVMIAGFVGAIIGPLVIKYGKIDSAVSRGVAVG 180 Query: 184 TASHALGTAKALEYGEQSVSMSSVAMTVCAIVGSIVGPI 222 +ASH +G K EYGEQ +S+ S++M + AI+G+ P+ Sbjct: 181 SASHGVGLVKLREYGEQELSVGSLSMGLTAIIGAFFCPL 219 >B1HPT0.1 B1HPT0_LYSSC Hypothetical yxaC protein Length = 225 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 118/219 (53%) Query: 4 LLAAGFVLMNVGIYLFMAMLYKRFRXXXXXXXXXXXXXXXXXXXGFDISYDTYMIGGEWI 63 ++ A VL + +++ LY+R+ F I Y TYM+GGEW+ Sbjct: 1 MIEAIVVLSTIIMFILFTKLYQRYPHPIMIPLVTTTVVSAVILLVFKIPYATYMVGGEWL 60 Query: 64 NRLLGPAVVSLAYPLYKQRHVLWQNLPAXXXXXXXXXXXXMFSGMLLAAGLGFSKLYVLS 123 ++LGPAVV+LAYPLY QR ++ + + + + LL +G ++L+ Sbjct: 61 QKMLGPAVVALAYPLYNQRAIIIKYKYSILSGLIIGMVTGLITIFLLLRSIGVKSSWMLT 120 Query: 124 ILPKSITTAVAIQIXXXXXXXXXXXXVFVMIAGFTGAIGGPYIIRLFRIRSESGIGIGLG 183 LPKS+TT V +Q+ VFVMIAGF GAI GP +I+ +I S G+ +G Sbjct: 121 ALPKSLTTPVGMQVSETIGGIPPLTAVFVMIAGFVGAIIGPLVIKYGKIDSAVSRGVAVG 180 Query: 184 TASHALGTAKALEYGEQSVSMSSVAMTVCAIVGSIVGPI 222 +ASH +G K EYGEQ +S+ S++M + AI+G+ P+ Sbjct: 181 SASHGVGLVKLREYGEQELSVGSLSMGLTAIIGAFFCPL 219 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,007,587,256 Number of extensions: 30480514 Number of successful extensions: 109381 Number of sequences better than 1.0e-05: 1128 Number of HSP's gapped: 108014 Number of HSP's successfully gapped: 1128 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)