BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0032.p
         (136 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2BDA0.1 Q2BDA0_9BACI Putative uncharacterized protein                 90   5e-17
C0H3T7.1 C0H3T7_BACSU Putative integral inner membrane protein i...    79   2e-13
A9VQ46.1 A9VQ46_BACWK LrgA family protein                              76   9e-13
C3AD51.1 C3AD51_BACMY Murein hydrolase exporter, LrgA                  76   9e-13
C2Y1J2.1 C2Y1J2_BACCE Murein hydrolase exporter, LrgA                  76   9e-13

>Q2BDA0.1 Q2BDA0_9BACI Putative uncharacterized protein
          Length = 162

 Score = 90.1 bits (222), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 1/134 (0%)

Query: 1   MKIIRIIAQVAVLYLFFLAGDYLQKQLHLPVPGSIVGXXXXXXXXXXKIVPVKLIEDGSL 60
           MK ++I+ Q+ VLY F   GD +Q+  H+P+PGSI+G           IVPV  ++DG+ 
Sbjct: 30  MKWLQIVLQICVLYAFTFTGDVIQRAFHIPIPGSIIGLLLLLACLLLHIVPVIFVKDGAS 89

Query: 61  FILAYLPMFFIPATAGIMNHLDIFSGRGLMMIGILVASSVLTMVVTAHATEWITVLRTGS 120
           F+L+ LP+ FIP+ AG++N+  + S  G ++  I+V S++ T+      ++++   R   
Sbjct: 90  FLLSILPLLFIPSMAGVVNYPSLLSATGAVLAAIVVVSTIATIAAAGLMSQFLEN-RADK 148

Query: 121 RSRSKITVAREKGS 134
           R   K   A    S
Sbjct: 149 RKEKKACKALSSQS 162


>C0H3T7.1 C0H3T7_BACSU Putative integral inner membrane protein involved in
           export murein hydrolases
          Length = 134

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 77/113 (68%)

Query: 1   MKIIRIIAQVAVLYLFFLAGDYLQKQLHLPVPGSIVGXXXXXXXXXXKIVPVKLIEDGSL 60
           MK+IRII QV +LY+FF+ G+ +Q   HLPV GSIVG          +IVPV +IEDG+ 
Sbjct: 1   MKVIRIILQVLILYVFFMIGEAIQHLFHLPVSGSIVGLVLLLICLGLRIVPVSIIEDGAG 60

Query: 61  FILAYLPMFFIPATAGIMNHLDIFSGRGLMMIGILVASSVLTMVVTAHATEWI 113
           F+L++LP+ FIPA  G++N+  + S  GLM++  +V S+++T++    A++ +
Sbjct: 61  FLLSFLPLLFIPAMTGVINYPSLISFNGLMLLITVVLSTIVTIIAAGFASQLL 113


>A9VQ46.1 A9VQ46_BACWK LrgA family protein
          Length = 122

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 72/113 (63%)

Query: 1   MKIIRIIAQVAVLYLFFLAGDYLQKQLHLPVPGSIVGXXXXXXXXXXKIVPVKLIEDGSL 60
           MK+ +I+ Q+A LY+F++ G+++Q+ L+LP+PGS++G          K++PVK  + G+ 
Sbjct: 1   MKLTKILVQIAALYVFYMVGNWVQEMLNLPIPGSLIGMFLLLVLLSLKVLPVKWFDLGAE 60

Query: 61  FILAYLPMFFIPATAGIMNHLDIFSGRGLMMIGILVASSVLTMVVTAHATEWI 113
            ++A +P   IP T G+MN+   F  +G+ +   +VAS+ L ++V  H  +++
Sbjct: 61  TLVAIMPFLLIPPTLGLMNYGAFFMSKGISLFITVVASTFLIIIVAGHTGQYL 113


>C3AD51.1 C3AD51_BACMY Murein hydrolase exporter, LrgA
          Length = 125

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 72/113 (63%)

Query: 1   MKIIRIIAQVAVLYLFFLAGDYLQKQLHLPVPGSIVGXXXXXXXXXXKIVPVKLIEDGSL 60
           MK+ +I+ Q+A LY+F++ G+++Q+ L+LP+PGS++G          K++PVK  + G+ 
Sbjct: 4   MKLTKILVQIAALYVFYMVGNWVQEMLNLPIPGSLIGMFLLLVLLSLKVLPVKWFDLGAE 63

Query: 61  FILAYLPMFFIPATAGIMNHLDIFSGRGLMMIGILVASSVLTMVVTAHATEWI 113
            ++A +P   IP T G+MN+   F  +G+ +   +VAS+ L ++V  H  +++
Sbjct: 64  TLVAIMPFLLIPPTLGLMNYGAFFMSKGISLFITVVASTFLIIIVAGHTGQYL 116


>C2Y1J2.1 C2Y1J2_BACCE Murein hydrolase exporter, LrgA
          Length = 125

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 72/113 (63%)

Query: 1   MKIIRIIAQVAVLYLFFLAGDYLQKQLHLPVPGSIVGXXXXXXXXXXKIVPVKLIEDGSL 60
           MK+ +I+ Q+A LY+F++ G+++Q+ L+LP+PGS++G          K++PVK  + G+ 
Sbjct: 4   MKLTKILVQIAALYVFYMVGNWVQEMLNLPIPGSLIGMFLLLVLLSLKVLPVKWFDLGAE 63

Query: 61  FILAYLPMFFIPATAGIMNHLDIFSGRGLMMIGILVASSVLTMVVTAHATEWI 113
            ++A +P   IP T G+MN+   F  +G+ +   +VAS+ L ++V  H  +++
Sbjct: 64  TLVAIMPFLLIPPTLGLMNYGAFFMSKGISLFITVVASTFLIIIVAGHTGQYL 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.142    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 674,379,723
Number of extensions: 22565970
Number of successful extensions: 71716
Number of sequences better than 1.0e-05: 597
Number of HSP's gapped: 71814
Number of HSP's successfully gapped: 597
Length of query: 136
Length of database: 3,060,696,203
Length adjustment: 100
Effective length of query: 36
Effective length of database: 2,118,594,703
Effective search space: 76269409308
Effective search space used: 76269409308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)